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Commit 13b5783e authored by Hanna JULIENNE's avatar Hanna JULIENNE
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Merge branch 'hot_fix_v3' into 'master' 

Update windows.py

See merge request !7
parents ba31601c 61a05c60
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1 merge request!7Update windows.py
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...@@ -164,7 +164,10 @@ def impg_like_imputation(ld_file, ref_panel, zscore, window_size, buffer, lamb, ...@@ -164,7 +164,10 @@ def impg_like_imputation(ld_file, ref_panel, zscore, window_size, buffer, lamb,
unknown_in_LD_reg_n_window = in_region(all_unknowns.pos, start_pos, end_pos) unknown_in_LD_reg_n_window = in_region(all_unknowns.pos, start_pos, end_pos)
known = zscore.loc[in_LD_reg_n_window].index known = zscore.loc[in_LD_reg_n_window].index
known = known.intersection(LD_mat.index)
unknowns = all_unknowns.loc[unknown_in_LD_reg_n_window].index unknowns = all_unknowns.loc[unknown_in_LD_reg_n_window].index
unknowns = unknowns.intersection(LD_mat.index)
sig_t = LD_mat.loc[known, known] sig_t = LD_mat.loc[known, known]
sig_i_t = LD_mat.loc[unknowns, known] sig_i_t = LD_mat.loc[unknowns, known]
......
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