Commit 2cc3f8a9 authored by Hanna  JULIENNE's avatar Hanna JULIENNE

correct inversion R2 var

parent 5ba219cd
......@@ -60,6 +60,7 @@ def impg_model(zt, sig_t, sig_i_t, lamb=0.01, rcond=0.01, batch=True):
if np.any(mu > 30):
print("ABERANT SNP SNiP")
var_norm = var_in_boundaries(var, lamb)
mu = mu / np.sqrt(var_norm)
R2 = (1-var_norm)
mu = mu / np.sqrt(R2)
return({"var" : var, "mu" : mu, "ld_score" : ld_score, "condition_number" : condition_number, "correct_inversion":correct_inversion })
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