Skip to content
GitLab
Projects
Groups
Snippets
Help
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
R
RAISS
Project overview
Project overview
Details
Activity
Releases
Repository
Repository
Files
Commits
Branches
Tags
Contributors
Graph
Compare
Issues
1
Issues
1
List
Boards
Labels
Service Desk
Milestones
Merge Requests
0
Merge Requests
0
CI / CD
CI / CD
Pipelines
Jobs
Schedules
Operations
Operations
Incidents
Environments
Packages & Registries
Packages & Registries
Container Registry
Analytics
Analytics
CI / CD
Repository
Value Stream
Wiki
Wiki
Snippets
Snippets
Members
Members
Collapse sidebar
Close sidebar
Activity
Graph
Create a new issue
Jobs
Commits
Issue Boards
Open sidebar
Statistical-Genetics
RAISS
Commits
2cc3f8a9
Commit
2cc3f8a9
authored
Apr 12, 2018
by
Hanna JULIENNE
Browse files
Options
Browse Files
Download
Email Patches
Plain Diff
correct inversion R2 var
parent
5ba219cd
Changes
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
with
2 additions
and
1 deletion
+2
-1
impute_jass/impute_jass/stat_models.py
impute_jass/impute_jass/stat_models.py
+2
-1
No files found.
impute_jass/impute_jass/stat_models.py
View file @
2cc3f8a9
...
...
@@ -60,6 +60,7 @@ def impg_model(zt, sig_t, sig_i_t, lamb=0.01, rcond=0.01, batch=True):
if
np
.
any
(
mu
>
30
):
print
(
"ABERANT SNP SNiP"
)
var_norm
=
var_in_boundaries
(
var
,
lamb
)
mu
=
mu
/
np
.
sqrt
(
var_norm
)
R2
=
(
1
-
var_norm
)
mu
=
mu
/
np
.
sqrt
(
R2
)
return
({
"var"
:
var
,
"mu"
:
mu
,
"ld_score"
:
ld_score
,
"condition_number"
:
condition_number
,
"correct_inversion"
:
correct_inversion
})
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment