Commit 9c7fffed authored by Hanna  JULIENNE's avatar Hanna JULIENNE
Browse files

added napoleon to sphinx conf

parent 61926e2f
pages:
image: alpine
stage: deploy
script:
- apk --no-cache add py2-pip python-dev
- pip install sphinx
- apk --no-cache add make
- cd doc
- make html
- mv build/html/ ../public
artifacts:
paths:
- public
only:
- master
......@@ -41,6 +41,7 @@ release = '1.0'
# ones.
extensions = [
'sphinx.ext.autodoc',
'sphinx.ext.napoleon',
'sphinx.ext.coverage',
'sphinx.ext.mathjax',
'sphinx.ext.viewcode',
......
"""
# -*- coding: utf-8 -*-
"""Imputation launcher
Function set to launch SNP imputation on a complete chromosome or
on the genome
"""
import glob
import pandas as pd
from .windows import ld_region_centered_window_imputation, prepare_zscore_for_imputation, impg_like_imputation, realigned_zfiles_on_panel
from .windows import prepare_zscore_for_imputation, impg_like_imputation, realigned_zfiles_on_panel
class ImputationLauncher(object):
"""
......
......@@ -10,8 +10,6 @@ Fast and accurate imputation of summary statistics enhances evidence
of functional enrichment, Bioinformatics, Volume 30, Issue 20, 15 October 2014,
Pages 2906–2914
Todo:
* add better docstring
"""
import numpy as np
......@@ -21,7 +19,7 @@ import scipy.linalg
def compute_mu(sig_i_t, sig_t_inv, zt):
"""
Compute the estimation of z-score from neighborring snp
Args:
sig_i_t (matrix?) : correlation matrix with line corresponding to
unknown Snp (snp to impute) and column to known SNPs
......
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