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version 1.4.0
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- README.md 5 additions, 0 deletionsREADME.md
- example/example1.sh 4 additions, 4 deletionsexample/example1.sh
- example/example2.sh 1 addition, 1 deletionexample/example2.sh
- example/example3.sh 4 additions, 4 deletionsexample/example3.sh
- example/example4.sh 1 addition, 1 deletionexample/example4.sh
- example/examples.sh 1 addition, 1 deletionexample/examples.sh
- example/run_af2comp.sh 3 additions, 3 deletionsexample/run_af2comp.sh
- example/run_fea_gen.sh 19 additions, 8 deletionsexample/run_fea_gen.sh
- example/run_relaxation.sh 1 addition, 0 deletionsexample/run_relaxation.sh
- example/targets/test.lst 2 additions, 2 deletionsexample/targets/test.lst
- notebook/AF2Complex_notebook.ipynb 1023 additions, 0 deletionsnotebook/AF2Complex_notebook.ipynb
- requirements.txt 7 additions, 5 deletionsrequirements.txt
- src/alphafold/common/confidence.py 1 addition, 1 deletionsrc/alphafold/common/confidence.py
- src/alphafold/common/residue_constants.py 3 additions, 3 deletionssrc/alphafold/common/residue_constants.py
- src/alphafold/data/pipeline.py 4 additions, 4 deletionssrc/alphafold/data/pipeline.py
- src/alphafold/data/pipeline_uniprot.py 199 additions, 0 deletionssrc/alphafold/data/pipeline_uniprot.py
- src/alphafold/data/templates.py 4 additions, 4 deletionssrc/alphafold/data/templates.py
- src/alphafold/data/tools/jackhmmer.py 18 additions, 8 deletionssrc/alphafold/data/tools/jackhmmer.py
- src/alphafold/model/all_atom_multimer.py 1 addition, 1 deletionsrc/alphafold/model/all_atom_multimer.py
- src/alphafold/model/common_modules.py 61 additions, 0 deletionssrc/alphafold/model/common_modules.py
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