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Commit 00122d92 authored by Quang tru HUYNH's avatar Quang tru HUYNH
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fix micromamna --no-deps

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Dockerfile
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...@@ -7,11 +7,13 @@ RUN apt-get update && \ ...@@ -7,11 +7,13 @@ RUN apt-get update && \
DEBIAN_FRONTEND=noninteractive apt-get -y autoremove && \ DEBIAN_FRONTEND=noninteractive apt-get -y autoremove && \
DEBIAN_FRONTEND=noninteractive apt-get -y clean autoclean DEBIAN_FRONTEND=noninteractive apt-get -y clean autoclean
RUN eval "$(micromamba shell hook -s posix )" && \ RUN export MAMBA_ROOT_PREFIX=/opt/conda && \
micromamba update micromamba && \ eval "$(micromamba shell hook -s posix )" && \
micromamba upgrade --all -y && \ micromamba update -q -y micromamba -c conda-forge -p ${MAMBA_ROOT_PREFIX} && \
micromamba update -q -y --all -c conda-forge -p ${MAMBA_ROOT_PREFIX} && \
mkdir -p ${MAMBA_ROOT_PREFIX}/envs && \
curl https://gitlab.pasteur.fr/tru/micromamba-py310-pytorch-cuda11.7/-/raw/main/conda-env-export.yml > conda-env-export.yml && \ curl https://gitlab.pasteur.fr/tru/micromamba-py310-pytorch-cuda11.7/-/raw/main/conda-env-export.yml > conda-env-export.yml && \
micromamba create --name py310-pytorch-1.13.1 --file conda-env-export.yml && \ micromamba create -y --no-deps --name py310-pytorch-1.13.1 --file conda-env-export.yml && \
micromamba activate py310-pytorch-1.13.1 && \ micromamba activate py310-pytorch-1.13.1 && \
micromamba env export > /conda-env-export.yml micromamba env export > /conda-env-export.yml
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Singularity
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View file @ 00122d92
...@@ -9,15 +9,18 @@ DEBIAN_FRONTEND=noninteractive apt-get -y upgrade && \ ...@@ -9,15 +9,18 @@ DEBIAN_FRONTEND=noninteractive apt-get -y upgrade && \
DEBIAN_FRONTEND=noninteractive apt-get -y autoremove && \ DEBIAN_FRONTEND=noninteractive apt-get -y autoremove && \
DEBIAN_FRONTEND=noninteractive apt-get -y clean autoclean DEBIAN_FRONTEND=noninteractive apt-get -y clean autoclean
export MAMBA_ROOT_PREFIX=/opt/conda && \
eval "$(micromamba shell hook -s posix )" && \ eval "$(micromamba shell hook -s posix )" && \
micromamba update micromamba && \ micromamba update -q -y micromamba -c conda-forge -p ${MAMBA_ROOT_PREFIX} && \
micromamba upgrade --all -y && \ micromamba update -q -y --all -c conda-forge -p ${MAMBA_ROOT_PREFIX} && \
mkdir -p ${MAMBA_ROOT_PREFIX}/envs && \
curl https://gitlab.pasteur.fr/tru/micromamba-py310-pytorch-cuda11.7/-/raw/main/conda-env-export.yml > conda-env-export.yml && \ curl https://gitlab.pasteur.fr/tru/micromamba-py310-pytorch-cuda11.7/-/raw/main/conda-env-export.yml > conda-env-export.yml && \
micromamba create --name py310-pytorch-1.13.1 --file conda-env-export.yml && \ micromamba create -y --no-deps --name py310-pytorch-1.13.1 --file conda-env-export.yml && \
micromamba activate py310-pytorch-1.13.1 && \ micromamba activate py310-pytorch-1.13.1 && \
micromamba env export > /conda-env-export.yml micromamba env export > /conda-env-export.yml
%post %post
export MAMBA_ROOT_PREFIX=/opt/conda && \
eval "$(micromamba shell hook -s posix )" && \ eval "$(micromamba shell hook -s posix )" && \
micromamba activate py310-pytorch-1.13.1 && \ micromamba activate py310-pytorch-1.13.1 && \
"$@" "$@"
runscript.sh
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View file @ 00122d92
#!/bin/bash #!/bin/bash
export MAMBA_ROOT_PREFIX=/opt/conda && \
eval "$(micromamba shell hook -s posix)" && \ eval "$(micromamba shell hook -s posix)" && \
micromamba activate py310-pytorch-1.13.1 && \ micromamba activate py310-pytorch-1.13.1 && \
"$@" "$@"
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