Skip to content
Snippets Groups Projects
Commit a3253571 authored by Quang tru HUYNH's avatar Quang tru HUYNH
Browse files

conda -> micromamba

parent a987d85c
No related branches found
No related tags found
No related merge requests found
Pipeline #99100 failed
Stage: build
Hide whitespace changes
Inline Side-by-side
Dockerfile
+ 8
− 8
View file @ a3253571
From mambaorg/micromamba:bullseye From mambaorg/micromamba:1-bullseye
# update conda and the OS # update conda and the OS
RUN conda update conda && \ RUN micromamba update micromamba && \
conda upgrade --all -y && \ micromamba upgrade --all -y && \
apt-get update && \ apt-get update && \
apt-get -y install curl && \ apt-get -y install curl && \
DEBIAN_FRONTEND=noninteractive apt-get -y upgrade && \ DEBIAN_FRONTEND=noninteractive apt-get -y upgrade && \
DEBIAN_FRONTEND=noninteractive apt-get -y autoremove && \ DEBIAN_FRONTEND=noninteractive apt-get -y autoremove && \
DEBIAN_FRONTEND=noninteractive apt-get -y clean autoclean DEBIAN_FRONTEND=noninteractive apt-get -y clean autoclean
RUN curl https://gitlab.pasteur.fr/tru/micromamba-py310-pytorch-cuda11.7/-/raw/main/conda-list--explicit.yml > conda-list--explicit.yml && \ RUN curl https://gitlab.pasteur.fr/tru/micromamba-py310-pytorch-cuda11.7/-/raw/main/conda-env-export.yml > conda-env-export.yml && \
conda create --name py310-pytorch-1.13.1 --file conda-list--explicit.yml && \ micromamba create --name py310-pytorch-1.13.1 --file conda-env-export.yml && \
eval "$(conda shell.bash hook)" && \ eval "$(micromamba shell hook -s posix )" && \
conda activate py310-pytorch-1.13.1 && \ micromamba activate py310-pytorch-1.13.1 && \
conda list --explicit > /conda-list--explicit.yml micromamba env export > /conda-env-export.yml
ADD https://gitlab.pasteur.fr/tru/micromamba-py310-pytorch-cuda11.7/-/raw/main/runscript.sh /runscript.sh ADD https://gitlab.pasteur.fr/tru/micromamba-py310-pytorch-cuda11.7/-/raw/main/runscript.sh /runscript.sh
RUN chmod 755 /runscript.sh RUN chmod 755 /runscript.sh
......
Singularity
+ 10
− 10
View file @ a3253571
Bootstrap: docker Bootstrap: docker
From: docker pull mambaorg/micromamba:bullseye From: docker pull mambaorg/micromamba:1-bullseye
%post %post
# update conda and the OS # update conda and the OS
conda update conda && \ micromamba update micromamba && \
conda upgrade --all -y && \ micromamba upgrade --all -y && \
apt-get update && \ apt-get update && \
apt-get -y install curl && \ apt-get -y install curl && \
DEBIAN_FRONTEND=noninteractive apt-get -y upgrade && \ DEBIAN_FRONTEND=noninteractive apt-get -y upgrade && \
DEBIAN_FRONTEND=noninteractive apt-get -y autoremove && \ DEBIAN_FRONTEND=noninteractive apt-get -y autoremove && \
DEBIAN_FRONTEND=noninteractive apt-get -y clean autoclean DEBIAN_FRONTEND=noninteractive apt-get -y clean autoclean
curl https://gitlab.pasteur.fr/tru/micromamba-py310-pytorch-cuda11.7/-/raw/main/conda-list--explicit.yml > conda-list--explicit.yml && \ curl https://gitlab.pasteur.fr/tru/micromamba-py310-pytorch-cuda11.7/-/raw/main/conda-env-export.yml > conda-env-export.yml && \
conda create --name py310-pytorch-1.13.1 --file conda-list--explicit.yml && \ micromamba create --name py310-pytorch-1.13.1 --file conda-env-export.yml && \
eval "$(conda shell.bash hook)" && \ eval "$(micromamba shell hook -s posix )" && \
conda activate py310-pytorch-1.13.1 && \ micromamba activate py310-pytorch-1.13.1 && \
conda list --explicit > /conda-list--explicit.yml micromamba env export > /conda-env-export.yml
%post %post
eval "$(conda shell.bash hook)" && \ eval "$(micromamba shell hook -s posix )" && \
conda activate py310-pytorch-1.13.1 && \ micromamba activate py310-pytorch-1.13.1 && \
"$@" "$@"
conda-env-export.yml 0 → 100644
+ 70
− 0
View file @ a3253571
name: py310-pytorch
channels:
- pytorch
- nvidia
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_kmp_llvm
- blas=2.116=mkl
- blas-devel=3.9.0=16_linux64_mkl
- bzip2=1.0.8=h7f98852_4
- ca-certificates=2022.12.7=ha878542_0
- cuda=11.7.1=0
- cuda-cudart=11.7.99=0
- cuda-cupti=11.7.101=0
- cuda-libraries=11.7.1=0
- cuda-nvrtc=11.7.99=0
- cuda-nvtx=11.7.91=0
- cuda-runtime=11.7.1=0
- cuda-toolkit=11.7.1=0
- cuda-tools=11.7.1=0
- gds-tools=1.6.0.25=0
- icu=70.1=h27087fc_0
- ld_impl_linux-64=2.40=h41732ed_0
- libblas=3.9.0=16_linux64_mkl
- libcblas=3.9.0=16_linux64_mkl
- libcublas=11.10.3.66=0
- libcufft=10.7.2.124=h4fbf590_0
- libcufile=1.6.0.25=0
- libcurand=10.3.2.56=0
- libcusolver=11.4.0.1=0
- libcusparse=11.7.4.91=0
- libffi=3.4.2=h7f98852_5
- libgcc-ng=12.2.0=h65d4601_19
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libgomp=12.2.0=h65d4601_19
- libhwloc=2.9.0=hd6dc26d_0
- libiconv=1.17=h166bdaf_0
- liblapack=3.9.0=16_linux64_mkl
- liblapacke=3.9.0=16_linux64_mkl
- libnpp=11.7.4.75=0
- libnsl=2.0.0=h7f98852_0
- libnvjpeg=11.8.0.2=0
- libsqlite=3.40.0=h753d276_0
- libstdcxx-ng=12.2.0=h46fd767_19
- libuuid=2.32.1=h7f98852_1000
- libxml2=2.10.3=h7463322_0
- libzlib=1.2.13=h166bdaf_4
- llvm-openmp=15.0.7=h0cdce71_0
- micromamba=1.3.1=0
- mkl=2022.1.0=h84fe81f_915
- mkl-devel=2022.1.0=ha770c72_916
- mkl-include=2022.1.0=h84fe81f_915
- ncurses=6.3=h27087fc_1
- openssl=3.0.8=h0b41bf4_0
- pip=23.0.1=pyhd8ed1ab_0
- python=3.10.9=he550d4f_0_cpython
- pytorch=1.13.1=py3.10_cuda11.7_cudnn8.5.0_0
- pytorch-cuda=11.7=h67b0de4_1
- pytorch-mutex=1.0=cuda
- readline=8.1.2=h0f457ee_0
- setuptools=67.4.0=pyhd8ed1ab_0
- tbb=2021.8.0=hf52228f_0
- tk=8.6.12=h27826a3_0
- typing_extensions=4.4.0=pyha770c72_0
- tzdata=2022g=h191b570_0
- wheel=0.38.4=pyhd8ed1ab_0
- xz=5.2.6=h166bdaf_0
prefix: /pasteur/appa/scratch/mambaforge/2023-03-02/envs/py310-pytorch
conda-list--explicit.yml deleted 100644 → 0
+ 0
− 67
View file @ a987d85c
# This file may be used to create an environment using:
# $ conda create --name <env> --file <this file>
# platform: linux-64
@EXPLICIT
https://conda.anaconda.org/nvidia/linux-64/cuda-cupti-11.7.101-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-nvtx-11.7.91-0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/micromamba-1.3.1-0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2022.12.7-ha878542_0.conda
https://conda.anaconda.org/nvidia/linux-64/cuda-cudart-11.7.99-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-nvrtc-11.7.99-0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.40-h41732ed_0.conda
https://conda.anaconda.org/nvidia/linux-64/libcublas-11.10.3.66-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/libcufft-10.7.2.124-h4fbf590_0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/libcufile-1.6.0.25-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/libcurand-10.3.2.56-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/libcusolver-11.4.0.1-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/libcusparse-11.7.4.91-0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-12.2.0-h337968e_19.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/libnpp-11.7.4.75-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/libnvjpeg-11.8.0.2-0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-12.2.0-h46fd767_19.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/mkl-include-2022.1.0-h84fe81f_915.tar.bz2
https://conda.anaconda.org/pytorch/noarch/pytorch-mutex-1.0-cuda.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/tzdata-2022g-h191b570_0.conda
https://conda.anaconda.org/nvidia/linux-64/cuda-libraries-11.7.1-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/gds-tools-1.6.0.25-0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-12.2.0-h69a702a_19.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libgomp-12.2.0-h65d4601_19.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-runtime-11.7.1-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-tools-11.7.1-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-toolkit-11.7.1-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-11.7.1-0.tar.bz2
https://conda.anaconda.org/pytorch/noarch/pytorch-cuda-11.7-h67b0de4_1.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_kmp_llvm.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-12.2.0-h65d4601_19.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h7f98852_4.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/icu-70.1-h27087fc_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.2-h7f98852_5.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.17-h166bdaf_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.0-h7f98852_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.32.1-h7f98852_1000.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.13-h166bdaf_4.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.3-h27087fc_1.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/openssl-3.0.8-h0b41bf4_0.conda
https://conda.anaconda.org/conda-forge/linux-64/xz-5.2.6-h166bdaf_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.40.0-h753d276_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libxml2-2.10.3-h7463322_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/llvm-openmp-15.0.7-h0cdce71_0.conda
https://conda.anaconda.org/conda-forge/linux-64/readline-8.1.2-h0f457ee_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.12-h27826a3_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libhwloc-2.9.0-hd6dc26d_0.conda
https://conda.anaconda.org/conda-forge/linux-64/python-3.10.9-he550d4f_0_cpython.conda
https://conda.anaconda.org/conda-forge/noarch/setuptools-67.4.0-pyhd8ed1ab_0.conda
https://conda.anaconda.org/conda-forge/linux-64/tbb-2021.8.0-hf52228f_0.conda
https://conda.anaconda.org/conda-forge/noarch/typing_extensions-4.4.0-pyha770c72_0.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/wheel-0.38.4-pyhd8ed1ab_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/mkl-2022.1.0-h84fe81f_915.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/pip-23.0.1-pyhd8ed1ab_0.conda
https://conda.anaconda.org/conda-forge/linux-64/libblas-3.9.0-16_linux64_mkl.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/mkl-devel-2022.1.0-ha770c72_916.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libcblas-3.9.0-16_linux64_mkl.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/liblapack-3.9.0-16_linux64_mkl.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/liblapacke-3.9.0-16_linux64_mkl.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/blas-devel-3.9.0-16_linux64_mkl.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/blas-2.116-mkl.tar.bz2
https://conda.anaconda.org/pytorch/linux-64/pytorch-1.13.1-py3.10_cuda11.7_cudnn8.5.0_0.tar.bz2
runscript.sh
+ 2
− 3
View file @ a3253571
#!/bin/bash #!/bin/bash
eval "$(conda shell.bash hook)" && \ eval "$(micromamba shell hook -s posix)" && \
conda activate py310-pytorch-1.13.1 && \ micromamba activate py310-pytorch-1.13.1 && \
"$@" "$@"
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment