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Commit 36c6dbfb authored by Quang tru HUYNH's avatar Quang tru HUYNH
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.gitlab-ci.yml 0 → 100644
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image: registry-gitlab.pasteur.fr/dsi-tools/docker-images/docker:latest
services:
- registry-gitlab.pasteur.fr/dsi-tools/docker-images/docker:dind
stages:
- build
docker:
stage: build
script:
- docker login -u gitlab-ci-token -p "$CI_BUILD_TOKEN" registry-gitlab.pasteur.fr
- export MY_TIME=`date +"%F-%H%M"`
- docker build --pull -t "$CI_REGISTRY_IMAGE:$CI_BUILD_REF_NAME" -t "$CI_REGISTRY_IMAGE:$CI_COMMIT_SHORT_SHA" -t "$CI_REGISTRY_IMAGE:latest" -t "$CI_REGISTRY_IMAGE:$MY_TIME" . -f Dockerfile
- docker push "$CI_REGISTRY_IMAGE"
singularity:
stage: build-singularity
image:
name: quay.io/singularity/singularity:v3.11.0
entrypoint: [""]
script:
- singularity build singularity.sif Singularity
- ls -lh singularity.sif
- singularity push --docker-username "${CI_REGISTRY_USER}" --docker-password "${CI_REGISTRY_PASSWORD}" singularity.sif oras://"$CI_REGISTRY_IMAGE":latest
artifacts:
paths:
- singularity.sif
Dockerfile 0 → 100644
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From continuumio/miniconda3
# update conda and the OS
RUN conda update conda && \
conda upgrade --all -y && \
apt-get update && \
apt-get -y install curl && \
DEBIAN_FRONTEND=noninteractive apt-get -y upgrade && \
DEBIAN_FRONTEND=noninteractive apt-get -y autoremove && \
DEBIAN_FRONTEND=noninteractive apt-get -y clean autoclean
# download the yml file
curl https://gitlab.pasteur.fr/tru/miniconda3-python310-pytorch-cuda11.7/-/raw/main/conda-env-export.yml > conda-env-export.yml
conda env create --file conda-env-export.yml && \
eval "$(conda shell.bash hook)" && \
conda activate py310-pytorch && \
conda list --explicit > /tmp/conda-list--explicit.yml
conda-env-export.yml 0 → 100644
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# This file may be used to create an environment using:
# $ conda create --name <env> --file <this file>
# platform: linux-64
@EXPLICIT
https://repo.anaconda.com/pkgs/main/linux-64/_libgcc_mutex-0.1-main.conda
https://repo.anaconda.com/pkgs/main/linux-64/blas-1.0-mkl.conda
https://repo.anaconda.com/pkgs/main/linux-64/ca-certificates-2023.01.10-h06a4308_0.conda
https://conda.anaconda.org/nvidia/linux-64/cuda-cccl-11.7.91-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-cudart-11.7.99-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-cuobjdump-11.7.91-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-cupti-11.7.101-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-cuxxfilt-11.7.91-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-documentation-12.1.55-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-driver-dev-11.7.99-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-gdb-12.1.55-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-memcheck-11.8.86-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-nvcc-11.7.99-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-nvdisasm-12.1.55-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-nvml-dev-11.7.91-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-nvprof-12.1.55-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-nvprune-11.7.91-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-nvrtc-11.7.99-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-nvtx-11.7.91-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-sanitizer-api-12.1.55-0.tar.bz2
https://repo.anaconda.com/pkgs/main/linux-64/ld_impl_linux-64-2.38-h1181459_1.conda
https://conda.anaconda.org/nvidia/linux-64/libcublas-11.10.3.66-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/libcufft-10.7.2.124-h4fbf590_0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/libcufile-1.6.0.25-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/libcurand-10.3.2.56-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/libcusolver-11.4.0.1-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/libcusparse-11.7.4.91-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/libnpp-11.7.4.75-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/libnvjpeg-11.8.0.2-0.tar.bz2
https://repo.anaconda.com/pkgs/main/linux-64/libstdcxx-ng-11.2.0-h1234567_1.conda
https://conda.anaconda.org/pytorch/noarch/pytorch-mutex-1.0-cuda.tar.bz2
https://repo.anaconda.com/pkgs/main/noarch/tzdata-2022g-h04d1e81_0.conda
https://conda.anaconda.org/nvidia/linux-64/cuda-command-line-tools-11.7.1-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-compiler-11.7.1-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-cudart-dev-11.7.99-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-libraries-11.7.1-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-nvrtc-dev-11.7.99-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-nvvp-12.1.55-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/gds-tools-1.6.0.25-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/libcublas-dev-11.10.3.66-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/libcufft-dev-10.7.2.124-h98a8f43_0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/libcufile-dev-1.6.0.25-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/libcurand-dev-10.3.2.56-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/libcusolver-dev-11.4.0.1-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/libcusparse-dev-11.7.4.91-0.tar.bz2
https://repo.anaconda.com/pkgs/main/linux-64/libgomp-11.2.0-h1234567_1.conda
https://conda.anaconda.org/nvidia/linux-64/libnpp-dev-11.7.4.75-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/libnvjpeg-dev-11.8.0.2-0.tar.bz2
https://repo.anaconda.com/pkgs/main/linux-64/_openmp_mutex-5.1-1_gnu.conda
https://conda.anaconda.org/nvidia/linux-64/cuda-libraries-dev-11.7.1-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-runtime-11.7.1-0.tar.bz2
https://conda.anaconda.org/nvidia/linux-64/cuda-visual-tools-11.7.1-0.tar.bz2
https://repo.anaconda.com/pkgs/main/linux-64/libgcc-ng-11.2.0-h1234567_1.conda
https://repo.anaconda.com/pkgs/main/linux-64/bzip2-1.0.8-h7b6447c_0.conda
https://conda.anaconda.org/nvidia/linux-64/cuda-tools-11.7.1-0.tar.bz2
https://repo.anaconda.com/pkgs/main/linux-64/libffi-3.4.2-h6a678d5_6.conda
https://repo.anaconda.com/pkgs/main/linux-64/libuuid-1.41.5-h5eee18b_0.conda
https://repo.anaconda.com/pkgs/main/linux-64/ncurses-6.4-h6a678d5_0.conda
https://repo.anaconda.com/pkgs/main/linux-64/openssl-1.1.1t-h7f8727e_0.conda
https://repo.anaconda.com/pkgs/main/linux-64/tbb-2021.7.0-hdb19cb5_0.conda
https://repo.anaconda.com/pkgs/main/linux-64/xz-5.2.10-h5eee18b_1.conda
https://repo.anaconda.com/pkgs/main/linux-64/zlib-1.2.13-h5eee18b_0.conda
https://conda.anaconda.org/nvidia/linux-64/cuda-toolkit-11.7.1-0.tar.bz2
https://repo.anaconda.com/pkgs/main/linux-64/intel-openmp-2023.0.0-h9e868ea_25371.conda
https://repo.anaconda.com/pkgs/main/linux-64/readline-8.2-h5eee18b_0.conda
https://repo.anaconda.com/pkgs/main/linux-64/tk-8.6.12-h1ccaba5_0.conda
https://conda.anaconda.org/nvidia/linux-64/cuda-11.7.1-0.tar.bz2
https://repo.anaconda.com/pkgs/main/linux-64/mkl-2023.0.0-h6d00ec8_25399.conda
https://repo.anaconda.com/pkgs/main/linux-64/sqlite-3.40.1-h5082296_0.conda
https://repo.anaconda.com/pkgs/main/linux-64/python-3.10.9-h7a1cb2a_0.conda
https://conda.anaconda.org/pytorch/noarch/pytorch-cuda-11.7-h67b0de4_1.tar.bz2
https://repo.anaconda.com/pkgs/main/linux-64/certifi-2022.12.7-py310h06a4308_0.conda
https://repo.anaconda.com/pkgs/main/noarch/flit-core-3.6.0-pyhd3eb1b0_0.conda
https://repo.anaconda.com/pkgs/main/linux-64/wheel-0.38.4-py310h06a4308_0.conda
https://repo.anaconda.com/pkgs/main/linux-64/setuptools-65.6.3-py310h06a4308_0.conda
https://repo.anaconda.com/pkgs/main/linux-64/typing_extensions-4.4.0-py310h06a4308_0.conda
https://repo.anaconda.com/pkgs/main/linux-64/pip-22.3.1-py310h06a4308_0.conda
https://conda.anaconda.org/pytorch/linux-64/pytorch-1.13.1-py3.10_cuda11.7_cudnn8.5.0_0.tar.bz2
conda-yaml.sh 0 → 100755
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#!/bin/bash
set -e
set -u
tbindir=$(mktemp -d)
trap "rm -rf \"$tbindir\"" TERM INT EXIT
_D=`date +%Y%m%d-%H%M`
if [ ! -z ${CONDA_DEFAULT_ENV} ]
then
conda list --explicit > ${_D}-${CONDA_DEFAULT_ENV}-conda-list--explicit.yml
conda env export --no-builds > ${_D}-${CONDA_DEFAULT_ENV}-conda-env-export--no-builds.yml
conda env export > ${_D}-${CONDA_DEFAULT_ENV}-conda-env-export.yml
else
not inside a conda environment
fi
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