updated documentation

R/coGSEA.r

@@ -3,7 +3,7 @@
 #'
 #' @param ElistObject  An Elist object.
 #' @param contrastMatrix  A contrast matrix.
-#' @param geneSetCollection  H, C2_KEGG, or C2_REACTOME, default to H (character).
+#' @param geneSetCollection  H, C2_KEGG, or C2_REACTOME, default to H (character). Can be custom of class list.
 #' @param specie  Mus musculus or Homo sapiens, default to Mus Musculus (character).
 #' @param ENTREZGenesIds  vector of gene ENTREZ identifiers.
 #' @param directoryPath  path to existing directory where to save the results ("character").

man/coGSEA.Rd

@@ -18,7 +18,7 @@ coGSEA(ElistObject, contrastMatrix, ENTREZGenesIds, geneSetCollection = "H",
 
 \item{ENTREZGenesIds}{vector of gene ENTREZ identifiers.}
 
-\item{geneSetCollection}{H, C2_KEGG, or C2_REACTOME, default to H (character).}
+\item{geneSetCollection}{H, C2_KEGG, or C2_REACTOME, default to H (character). Can be custom of class list.}
 
 \item{specie}{Mus musculus or Homo sapiens, default to Mus Musculus (character).}