Skip to content
Snippets Groups Projects
Commit 0963b29e authored by Veronique Legrand's avatar Veronique Legrand
Browse files

fixed usage indentation

parent 7ad77afb
No related branches found
No related tags found
No related merge requests found
Pipeline #70943 passed
......@@ -41,22 +41,24 @@
using namespace std;
void usage(int status) {
cout<<" FQreport 1.0 Copyright (C) 2021 Institut Pasteur"<<endl;
cout<<endl;
cout<<" USAGE: fqreport [-i <infile>] [-o <outfile>] [-f <name>] [-p <offset>] [-h]"<<endl;
cout<<"FQreport 1.0 Copyright (C) 2021 Institut Pasteur"<<endl;
cout<<endl;
cout<<" OPTIONS:"<<endl;
cout<<" -i <file> input file in FASTQ format (default: standard input)"<<endl;
cout<<" -f <string> sample name (default: file name set using option -i)"<<endl;
cout<<" -o <file> output file name (default: standard output)"<<endl;
cout<<" -p <33|64> Phred offset (default: 33)"<<endl;
cout<<" -h print this help and exit"<<endl;
cout<<"USAGE: fqreport [-i <infile>] [-o <outfile>] [-f <name>] [-p <offset>] [-h]"<<endl;
cout<<endl;
cout<<"OPTIONS:"<<endl;
cout<<" -i <file> input file in FASTQ format (default: standard input)"<<endl;
cout<<" -f <string> sample name (default: file name set using option -i)"<<endl;
cout<<" -o <file> output file name (default: standard output)"<<endl;
cout<<" -p <33|64> Phred offset (default: 33)"<<endl;
cout<<" -h print this help and exit"<<endl;
cout<<endl;
cout<<"EXAMPLES:"<<endl;
cout<<" fqreport -i infile.fastq -o report.txt"<<endl;
cout<<" fqreport -i infile.fastq -f sample -p 64"<<endl;
cout<<" cat infile.fastq | fqreport -f sample -o report.txt"<<endl;
cout<<" gunzip -c infile.fastq.gz | fqreport"<<endl;
cout<<endl;
cout<<" EXAMPLES:"<<endl;
cout<<" fqreport -i infile.fastq -o report.txt"<<endl;
cout<<" fqreport -i infile.fastq -f sample -p 64"<<endl;
cout<<" cat infile.fastq | fqreport -f sample -o report.txt"<<endl;
cout<<" gunzip -c infile.fastq.gz | fqreport"<<endl;
exit(status);
}
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Please register or to comment