Tags

Tags give the ability to mark specific points in history as being important

v_4.1_beta

731754be · commented benchmark mode for thos test version · Oct 22, 2026
```
 Trying a new hash function provided by AC
```

V_4.0_beta

4863c8a7 · work in progress for version 4.0: changed the way a read score is computed;... · Oct 16, 2026

 In this version total read score calculation has changed thus changing the sorting of read and the order in which they are processed and inserted in the CMS

V_3.1_beta

774a81fc · Merge branch 'evo_nanopore' of https://gitlab.pasteur.fr/vlegrand/ROCK into evo_nanopore · Oct 14, 2026
```
Version 3.1 beta
```
V_3.0

7c22155f · 3.0 · Jun 20, 2025

v_2.1

da2ad332 · finalizing things for version 2.1 · Feb 17, 2025

New version 2.1 fixes bug in the conversion of lseek return value that impacted only very large files

V_2.0

39f23adf · updated man · May 31, 2022

Version 2.0 with option to process PE separately.

V_1.9.6

983f0197 · fixed distcheck; updated files dor automake 1.16.3 · Jan 20, 2022

made fastq parser code simpler; fixed bug related to the presence of + char in read id and PE2 score

v_1.9.6

983f0197 · fixed distcheck; updated files dor automake 1.16.3 · Jan 20, 2022

made fastq parser code simpler; fixed bug related to the presence of + char in read id and PE2 score

v_1.9.5

8c0033d1 · fixed bug related to the handling of '+' char in scores; did some leaning; updated version number · Dec 09, 2021
```
New release that fixes a bug in the rocessing of scores
```
v_1.9.4

1efb2ca2 · updated News · Aug 26, 2021
```
refactored version
```
V_1.9.3

e7ca54dc · Update README.md · May 27, 2021
```
new version 1.9.3
```
V_1.9.2

5a6d81ac · fixed getNbDistinctKMers after discussing with Alexis · Apr 29, 2021
```
version 1.9.2
```

V_1.9.1

59f1d08c · fixed compilation issue · Apr 26, 2021

added option -f to allow the user to specify what probability of collision they want

V_1.9

e21c8b0c · Merge branch 'try_things' of https://gitlab.pasteur.fr/vlegrand/ROCK into try_things · Apr 26, 2021
```
version 1.9
```
V_1.8

6c67aa25 · Merge branch 'master' of https://projets.pasteur.fr/git/homogeneisation-couverture-pre-assemblage · Jun 29, 2017
```
bugfix single reads endef in undef when processed together with PE treated separately.
```
V_1.6

7edeb268 · ROCKparams.cpp · Apr 20, 2017
```
Rock version 1.6
```
1.5.1

e8abb450 · bugfix in the case of --PE-separated option. · Mar 14, 2017
V_1.5

603a19d8 · fixed compilation issues under linux centOS. · Jan 09, 2017
V1.4

d69429c9 · version 1.4 with minimum number of valid k-mer option. · Dec 16, 2016
V1.3

99c5e17d · Merge branch 'master' of https://projets.pasteur.fr/git/homogeneisation-couverture-pre-assemblage · Dec 01, 2016