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Vincent MALLET
InDeep
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50bac8fd
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50bac8fd
authored
3 years ago
by
Vincentx15
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small fix on the README, added link to the weights
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# InDeep : 3D convolutional neural networks to assist in silico drug design
on protein-protein interactions
# InDeep : 3D convolutional neural networks to assist in silico drug design on protein-protein interactions
## Description
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@@ -11,6 +10,12 @@ These predictions can be visualised easily.
## Setup
### Getting the weights
You can download the wights used for the neural network prediction through this link :
https://mega.nz/file/mEVQUJwR#tqLX-UGo3a8yORmQJB9tYxx7teXF3PyEUBbyVYEnCt0
You should copy them to a directory named ROOT_OF_PROJECT/results/weights/HPO/
### Packages
To run this code, one need to use python with several packages.
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@@ -38,7 +43,7 @@ To setup the PyMol plugin, just activate your environment and type pymol in the
commandline to launch PyMol.
Then click on the tab
*Plugin*
and
*Plugin Manager*
and on the window that pops, click on the tab
*Settings*
In this tab, one can
*Add new directory...*
and select :
```
ROOT_OF_PROJECT/
DeepInterface/
DeepPPI_pymol_script```
```
ROOT_OF_PROJECT/DeepPPI_pymol_script```
Finally, one should quit PyMol and relaunch it by running pymol in the command line.
In the tab *Plugin*, there should be a new plugin : *deepPPI Plugin* that one can use directly.
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