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Commit 3576ef44 authored by Mélanie  HENNART's avatar Mélanie HENNART
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Update README.md

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......@@ -63,18 +63,23 @@ If Database exist :
## Example
The directory example contains allelic profiles file of Elizabethkingia.
This file is download on the site following : http://bigsdb.pasteur.fr/elizabethkingia/elizabethkingia.html
It contains 183 allelic profiles of the bacteria Elizabethkingia, with 1546 loci.
Identifiants bacterial is in column 1-2 and all others is loci.
In the example folder, you have example files from the following command:
- Create DataBase LIN :
```bash
python LINcode.py -i BIGSdb.txt -t 1-2 -l 3- -b 1,20,45,66,80,90,95,96,98,99,100
python LINcode.py -i BIGSdb_eliza.txt -t 1-2 -l 3- -b 10,20,50,80,95,99.67,99.74,99.81,99.87,99.94,100.0
```
- Update DataBase LIN :
```bash
python LINcode.py -i new_Ecoli.txt -r BIGSdb.lin -t 1-2 -l 3-
python LINcode.py -i new_Ecoli.txt -r BIGSdb_eliza.txt -t 1-2 -l 3-
```
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