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Commit a9b87867 authored by Mélanie  HENNART's avatar Mélanie HENNART
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......@@ -75,8 +75,7 @@ In the example folder, you have example files from the following command:
```bash
python LINcode.py -i BIGSdb_eliza.txt -t 1-2 -l 3- -b 10,20,50,80,99.68,99.74,99.81,99.87,99.94,100
```
output :
This code ligne return :
- .lin file :
```bash
......@@ -92,7 +91,6 @@ output :
16_0_0_0_1_0_0_0_0_0 9 6 0 0 0 4 9 6 5 8 0 0 6 6 6 8 0 6 8 0 0 6 6 4 8 0 6 0 6 5 6 6 0 5 7 6 6 6 6 8 9 6 6 0 6 6 8 6 6 6 8 8 0 6 9 0 6 0 6 6 7 4 0 6 5 0 4 4 5 5 0 5 5 0 8 5 0 0 7 4 6 5 5 5 6 5 0 0 6 6 6 6 9 7 7 6 5 9 8 0 6 6 3 0 4 6 0 6 0 5 0 6 3 8 6 5 4 6 0 8 8 0 6 8 0 5 6 6 6 6 6 6 6 9 6 5 4 9 5 6 0 5 6 6 0 5 0 6 9 6 6 0 7 0 4 10 0 5 6 9 9 0 6 8 6 6 0 0 8 8 7 0 6 6 8 6 9 6 6 0 0 8 5 6 9 6 5 0 6 8 6 5 8 7 0 6 8 5 6 5 7 7 7 5 5 5 5 6 8 0 0 8 8 6 6 5 5 9 9 8 6 6 6 8 6 8 9 6 0 5 0 0 6 9 6 6 6 6 0 6 9 6 5 6 6 5 5 6 6 6 6 5 5 6 6 5 7 6 0 0 0 9 7 0 0 0 0 6 6 6 5 6 0 0 6 0 0 6 8 6 0 6 9 6 6 8 0 6 5 0 6 5 6 0 9 6 0 6 5 6 5 6 0 0 6 9 6 6 9 0 6 6 0 8 0 8 9 6 10 6 9 8 5 6 5 6 0 7 6 6 5 6 0 5 4 4 0 8 9 6 0 0 6 5 5 6 6 0 6 6 9 5 6 8 6 8 5 0 6 5 4 4 0 0 5 5 3 8 6 6 6 5 0 0 4 0 0 5 7 0 6 6 5 2 8 6 6 0 4 8 3 4 3 8 5 5 3 5 6 6 6 6 6 6 6 0 5 9 9 9 6 5 4 6 6 8 8 8 6 0 7 4 5 5 3 0 6 6 8 4 6 7 5 6 6 6 5 6 6 7 4 6 5 6 5 6 6 5 7 8 8 6 6 7 4 5 5 9 0 9 6 6 5 8 6 5 8 6 5 6 5 8 8 0 9 6 7 0 8 5 6 0 5 7 8 0 7 6 6 6 3 5 8 5 4 6 6 6 6 6 8 5 5 5 8 6 5 6 7 9 5 6 6 0 6 7 0 6 2 6 7 6 6 5 6 9 6 4 0 7 4 0 8 6 6 0 0 5 0 9 6 7 6 6 6 6 4 9 5 6 6 4 6 4 5 0 6 5 6 8 9 5 6 8 0 6 5 5 5 6 7 7 6 4 6 6 0 6 6 0 6 6 6 4 6 3 6 8 5 6 3 6 6 7 6 7 9 5 6 6 6 6 6 7 9 3 8 6 6 0 5 6 0 0 3 0 0 8 6 6 6 6 6 6 9 3 6 6 6 4 6 8 6 5 5 5 8 6 8 6 6 8 8 6 9 0 5 5 9 6 6 6 8 4 0 6 7 6 5 6 7 6 4 8 6 6 0 0 11 5 8 5 6 4 6 0 0 7 6 8 5 0 6 0 6 6 6 6 9 6 0 6 6 5 6 6 0 6 6 6 6 6 6 6 0 0 0 8 8 6 0 9 9 6 6 5 4 6 6 4 7 5 6 4 7 6 6 4 6 5 7 0 3 8 5 0 0 6 6 8 6 6 6 9 6 8 5 4 0 5 7 3 5 7 5 6 6 6 5 5 7 5 6 0 6 9 6 5 6 6 6 9 6 7 6 4 5 6 4 8 6 0 0 6 5 8 6 4 5 8 2 4 5 3 6 6 4 6 0 0 0 5 9 6 4 0 6 5 6 6 5 0 9 6 6 0 6 5 8 6 6 8 4 0 6 3 0 0 6 6 6 7 5 5 3 8 6 6 6 0 7 5 8 6 6 4 5 6 6 5 9 5 0 5 6 4 3 2 6 6 6 0 6 8 5 9 0 8 8 4 6 0 5 6 0 5 0 0 9 6 7 5 6 6 0 7 0 5 9 7 5 9 5 6 6 6 5 9 6 6 9 6 9 6 6 0 5 6 4 4 6 6 5 5 6 6 5 3 3 4 5 4 3 3 3 3 5 6 4 5 4 6 9 9 0 9 3 7 3 3 6 6 8 0 6 6 6 6 8 6 6 6 5 8 0 0 6 3 0 8 8 9 6 0 6 6 9 9 5 5 0 5 5 4 6 7 6 6 7 6 0 5 5 6 0 8 9 6 9 4 6 6 6 6 4 6 6 6 4 6 8 6 10 8 4 4 4 0 8 6 6 8 0 5 6 6 6 6 5 6 6 8 6 6 6 0 5 6 6 5 6 6 8 5 6 10 5 6 0 8 9 0 0 0 6 0 0 6 6 6 2 5 6 6 6 6 6 6 9 4 0 6 5 0 0 0 7 3 6 8 4 5 8 8 6 6 8 6 8 6 6 4 6 5 4 6 9 0 6 6 6 6 6 6 6 5 2 6 4 6 7 6 0 4 6 4 2 0 0 6 6 7 6 6 5 0 0 8 6 0 0 0 6 8 9 7 5 0 8 0 6 6 9 3 6 4 6 8 6 6 3 8 6 0 6 5 5 0 4 8 6 6 6 8 7 4 0 6 9 9 9 6 4 10 6 8 6 5 8 6 8 0 9 6 6 6 8 6 5 6 6 6 5 0 8 6 8 6 0 6 5 8 5 7 6 6 0 0 5 9 6 8 6 6 4 8 0 8 6 6 0 7 8 0 6 0 0 7 6 0 6 0 6 0 0 6 0 0 0 7 6 6 6 8 6 3 6 6 0 0 6 6 6 6 0 6 6 6 9 6 6 8 6 6 6 6 0 0 8 9 0 4 0 0 4 5 0 0 6 0 7 7 5 6 8 7 0 8 6 6 7 0 8 6 0 0 6 6 5 6 6 6 6 9 9 8 0 6 5 6 6 6 4 0 4 6 3 6 6 6 6 5 5 6 6 8 0 0 5 6 6 0 6 0 6 0 0 0 10 5 0 0 4 5 5 8 6 6 6 6 6 6 6 6 0 7 6 6 3 5 6 2 6 4 0 0 0 7 5 6 6 0 0 0 0 0 6 8 6 8 5 0 6 0 0 0 9 0 0 0 8 0 6 8 5 7 5 0 6 6 8 0 6 7 0 0 8 0 8 0 0 0 9 6 6 8 8 6 6 0 0 6 0 6 0 0 0 6 6 8 6 6 6 10 9 6 0 0 6 6 0 6 5 4 3 0 0 4 6 6 5 4 6 7 5 3 6 6 4 6 5 4 5 5 3 3 6 6 6 0 9 9 3 3 8 6 6 6 0 5 6 6 6 0 6 8 6 5 6 7 6 6 9 6 6 0 6 2 0 4 5 8 5 6 4 3 0 7 6 5 4 0 6 6 2 6 6 9 8 6 6 4 6 6 6 6 6 0 0 6 6 7 5 9 7 5 8 4 9 6 6 7 6 0 0 8 6 6 6 6 4 8 6 5 9 4
17_0_0_0_0_0_0_0_0_0 21 25 0 0 0 20 29 18 5 20 0 0 18 25 19 22 0 18 8 0 0 19 28 4 19 0 16 0 20 24 19 21 0 20 19 28 19 27 20 24 24 21 26 0 22 17 23 18 15 15 17 27 0 20 21 0 21 0 23 26 20 18 0 25 25 0 15 4 15 24 0 17 19 0 16 22 0 0 20 23 27 20 5 16 23 19 0 0 18 19 28 23 27 21 19 22 17 26 20 0 26 26 3 0 21 26 0 18 0 15 0 22 12 28 19 17 24 19 0 22 25 0 20 26 0 19 23 19 27 19 27 20 20 22 25 21 16 22 19 20 0 13 24 21 0 20 0 20 22 20 21 16 18 22 16 21 0 11 24 25 23 0 13 27 26 24 0 0 17 26 21 0 20 19 25 19 25 17 18 0 0 24 25 21 21 30 20 0 17 8 23 5 20 24 0 21 14 16 21 17 14 7 27 18 18 11 22 17 19 0 0 20 23 26 19 17 18 20 24 23 17 25 26 20 18 17 24 25 0 17 0 0 20 26 27 20 19 16 0 23 9 6 15 31 17 19 18 23 12 19 17 18 16 18 18 5 25 17 0 0 19 22 20 18 0 0 0 18 17 27 20 18 0 0 19 0 0 21 18 22 0 19 27 23 20 20 0 19 5 0 25 24 20 0 25 19 0 18 23 29 14 6 25 0 23 20 16 21 9 0 21 20 19 15 0 26 27 27 21 26 20 15 22 25 24 13 0 19 26 15 15 27 0 20 4 12 0 0 20 23 0 0 17 23 21 18 6 0 28 24 20 20 25 19 19 18 21 19 26 5 10 22 0 0 19 17 16 29 19 23 18 18 0 0 4 0 0 18 14 0 16 22 22 2 24 17 17 0 12 19 15 24 13 27 20 5 12 17 24 21 22 19 27 18 29 18 20 25 23 20 25 25 15 18 19 15 17 14 14 0 15 20 17 19 17 0 26 16 14 15 26 22 14 20 20 19 24 27 24 28 20 24 21 19 19 21 25 16 15 20 18 18 18 18 0 15 15 24 0 26 19 21 16 21 25 5 23 26 26 18 15 0 17 0 18 21 27 0 0 16 23 0 18 18 0 0 21 21 23 23 3 14 18 28 23 25 19 18 25 25 25 18 5 18 8 6 24 6 20 22 25 6 18 0 26 27 0 20 10 20 25 21 19 15 13 28 27 18 0 23 13 0 0 20 17 0 0 17 0 9 19 17 19 26 25 29 17 21 24 23 26 21 24 18 27 0 28 17 16 21 21 20 21 17 0 6 5 16 21 6 21 22 26 10 19 23 0 21 23 22 25 24 22 15 29 14 28 28 23 22 20 27 17 15 13 23 20 5 17 6 21 17 28 23 30 15 19 16 24 0 26 17 0 0 3 0 0 26 23 22 23 24 19 6 26 14 24 26 20 13 23 16 22 23 25 21 16 18 18 28 24 19 22 20 22 0 16 5 26 6 18 17 23 15 0 20 21 19 17 6 23 25 24 26 21 22 0 9 30 18 18 17 18 16 21 0 0 14 21 15 18 0 24 25 22 28 28 19 19 19 0 27 19 14 22 19 0 23 25 26 24 22 16 25 0 0 0 0 0 28 0 25 21 26 17 25 4 6 6 4 23 5 20 17 20 23 14 16 18 20 24 0 15 19 18 0 28 26 26 22 17 25 19 25 18 27 17 4 0 15 16 10 27 26 5 27 18 22 18 18 16 21 18 0 21 21 27 18 21 22 27 28 19 24 19 17 18 18 20 19 25 0 0 6 15 16 20 14 21 24 2 4 22 3 15 22 4 23 0 0 0 17 25 20 15 0 19 13 24 23 18 0 20 26 23 0 21 5 19 16 19 18 15 0 18 3 0 0 23 20 20 24 16 5 12 19 18 18 26 0 25 16 18 22 24 17 5 6 19 23 9 18 0 24 18 11 8 11 16 25 27 0 18 19 16 16 0 23 19 15 18 0 21 19 0 15 0 0 19 27 21 22 24 26 0 17 0 5 27 24 18 19 21 25 19 17 15 18 24 25 29 19 21 26 6 0 21 27 4 4 24 24 24 16 18 24 18 3 3 4 20 17 3 3 3 3 5 6 15 17 4 19 28 0 0 23 3 27 3 3 25 21 19 0 18 20 18 19 19 19 29 19 16 20 0 0 18 13 0 16 18 27 15 24 18 15 16 22 17 24 0 5 5 4 6 21 19 24 25 6 0 0 15 16 0 19 29 21 25 23 27 24 23 27 13 17 6 20 15 29 18 25 28 16 13 15 18 0 26 21 17 20 0 15 23 17 20 25 22 27 20 20 21 21 28 0 16 19 26 5 25 21 27 18 29 21 17 19 0 29 29 0 0 29 13 0 0 18 6 18 2 13 23 29 27 24 19 26 26 18 0 25 23 0 0 0 16 3 19 25 4 13 16 23 27 22 19 28 27 20 17 14 20 5 11 19 23 0 28 26 19 27 20 26 18 14 15 22 16 18 22 24 0 17 20 18 6 0 0 20 27 19 17 19 20 0 0 18 24 0 0 0 17 22 27 28 17 0 26 15 6 28 19 13 21 24 27 8 6 23 17 18 23 0 18 17 17 0 22 17 23 17 25 22 25 19 0 18 21 19 0 16 14 20 20 20 22 19 8 28 27 20 26 23 24 6 23 23 16 20 19 20 15 0 26 23 18 25 0 24 5 19 5 24 19 20 0 0 18 25 18 18 28 23 11 0 0 26 27 24 0 7 19 0 18 0 0 19 20 0 21 0 27 0 0 0 0 0 0 21 19 16 23 27 19 10 21 26 0 0 21 22 16 18 0 19 19 20 26 19 26 18 28 19 6 21 0 0 20 27 0 16 26 0 4 16 0 0 21 0 24 14 19 12 17 23 0 24 26 17 23 0 25 28 0 0 29 20 12 19 17 20 23 28 20 18 0 27 14 19 0 6 13 0 10 20 22 27 23 25 26 14 18 27 20 27 0 0 18 21 20 0 20 0 23 0 0 0 22 19 0 0 4 16 5 17 22 25 20 25 15 22 17 18 0 28 6 19 13 22 19 2 18 14 0 0 0 24 17 21 20 24 0 0 0 0 6 17 0 26 19 0 19 0 0 0 21 0 0 0 21 0 20 18 18 15 15 0 25 16 23 0 13 17 0 0 18 0 18 0 0 0 27 20 25 18 0 18 17 0 0 25 0 27 0 0 0 28 19 18 19 24 18 20 22 27 0 0 19 20 0 19 20 13 3 0 0 13 19 18 13 12 6 15 23 13 17 23 17 26 18 18 21 13 3 3 19 20 25 0 28 9 13 11 26 18 20 6 0 25 25 20 20 18 20 18 16 5 18 19 27 6 21 25 21 0 19 14 0 4 24 27 25 19 15 23 0 19 27 20 24 0 26 25 2 6 18 20 20 24 19 21 21 16 17 19 27 0 0 20 21 25 0 25 16 25 20 17 18 21 19 21 19 0 0 20 29 26 16 28 10 17 26 17 27 21
```
- .txt file :
```bash
......
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