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Commit b9380298 authored by Alexis CRISCUOLO's avatar Alexis CRISCUOLO
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1.1

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SimiPlot.sh
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......@@ -32,7 +32,11 @@
# = VERSIONS = #
# ============ #
# #
VERSION=1.0.220321ac #
VERSION=1.1.230220ac #
# + updating finalizers for BLAST+ version >= 2.13.0 #
# + fixed bug when the reference contains multiple sequences #
# #
# VERSION=1.0.220321ac #
# #
##############################################################################################################
......@@ -264,7 +268,7 @@ TMP=$(randfile $OUTFILE.tmp);
## defining traps ############################################################################################
finalizer() {
rm -f $DB $DB.ndb $DB.nhr $DB.nin $DB.not $DB.nsq $DB.ntf $DB.nto ;
rm -f $DB $DB.ndb $DB.nhr $DB.nin $DB.njs $DB.not $DB.nsq $DB.ntf $DB.nto ;
rm -f $FRAG $TMP ;
}
echoxit() {
......@@ -311,7 +315,9 @@ fi
echo " window size (-w) $WSIZE" ;
## formatting reference sequences ############################################################################
$MKBNDB -in $REFFILE -out $DB &>/dev/null ;
echo ">ref" > $FRAG ;
grep -v "^>" $REFFILE >> $FRAG ;
$MKBNDB -in $FRAG -out $DB &>/dev/null ;
## checking no. threads ######################################################################################
[ $NTHREADS -lt 1 ] && NTHREADS=1;
......@@ -341,7 +347,7 @@ do
INFO=$(randfile $FASTA.info);
INFOFILES="$INFOFILES $INFO";
finalizer() {
rm -f $DB $DB.ndb $DB.nhr $DB.nin $DB.not $DB.nsq $DB.ntf $DB.nto ;
rm -f $DB $DB.ndb $DB.nhr $DB.nin $DB.njs $DB.not $DB.nsq $DB.ntf $DB.nto ;
rm -f $FRAG $TMP ;
rm -f $INFOFILES ;
}
......
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