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Commit e4477202 authored by Andrey Aristov's avatar Andrey Aristov
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upodate paths

parent 793760c9
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...@@ -27,10 +27,10 @@ rule align_and_count_2D: ...@@ -27,10 +27,10 @@ rule align_and_count_2D:
template="template16_pad100-adj.tif", template="template16_pad100-adj.tif",
labels="labels_bin2+100.tif" labels="labels_bin2+100.tif"
output: output:
directory("{folder}/day{day}/BF_TRITC_aligned.zarr"), zarr = directory("{folder}/day{day}/BF_TRITC_aligned.zarr"),
table = "{folder}/day{day}/table.csv" table = "{folder}/day{day}/table.csv"
shell: shell:
"python align.py {input.data} {output} {input.concentrations} {input.template} {input.labels} {output.table} 0" "python align.py {input.data} {output.zarr} {input.concentrations} {input.template} {input.labels} {output.table} 0"
rule get_sizes_nd2: rule get_sizes_nd2:
......
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