flip J15

flip_timelapse_SUMO.py

@@ -12,13 +12,13 @@ logger = logging.getLogger(__name__)
 path = "/home/aaristov/Multicell/Sebastien/mESC_aggregates/SUMO/SOX1-T_Movie/{well}/POINT 00001/aligned.tif"
 
 coords = {
-    "H10": [34, 35, 36, 37, 38, 39, 40],
-    "I12": [15, 18, 20],
-    "J08": [37],
-    "J12": [27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40],
-    "J15": range(13, 40),
-    "L13": [14, 17, 36, 37, 38, 39, 40],
-    "N06": [17],
+    # "H10": [34, 35, 36, 37, 38, 39, 40],
+    # "I12": [15, 18, 20],
+    # "J08": [37],
+    # "J12": [27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40],
+    "J15": [1,2,3,4,34,35,36,37,38],
+    # "L13": [14, 17, 36, 37, 38, 39, 40],
+    # "N06": [17],
 }
 
 def flip_gfp_rfp_values(csv_file_path, frames_to_flip):
@@ -54,7 +54,7 @@ def flip_frames(file_path, frames_to_flip):
     new_file_path = file_path.replace('aligned.tif', 'realigned.tif')
     assert new_file_path != file_path
 
-    flip_gfp_rfp_values(file_path.replace("aligned.tif", "peaks.csv"), frames_to_flip)
+    # flip_gfp_rfp_values(file_path.replace("aligned.tif", "peaks.csv"), frames_to_flip)
 
     try:
         assert not os.path.exists(new_file_path)