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Commit 02b5f0e0 authored by Amine  GHOZLANE's avatar Amine GHOZLANE
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No dup debug

parent e2c6f213
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...@@ -142,7 +142,7 @@ process extract_snp { ...@@ -142,7 +142,7 @@ process extract_snp {
output: output:
file("*_snp*.tsv") into snpChannel file("*_snp*.tsv") into snpChannel
file("*_mpileup.vcf.gz") into vcfChannel file("*_mpileup.vcf.gz") into vcfChannel
file("*_nodup.bam" file("*_nodup.bam") into nodupbam
script: script:
""" """
...@@ -210,6 +210,7 @@ process compute_frequencies { ...@@ -210,6 +210,7 @@ process compute_frequencies {
round(frequency, 3)), file=output) round(frequency, 3)), file=output)
""" """
} }
process counts_measles { process counts_measles {
//publishDir "$myDir", mode: 'copy' //publishDir "$myDir", mode: 'copy'
memory "2G" memory "2G"
......
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