Welcome to Panna cotta recipe

0635f8ed · Amandine PERRIN · 0635f8ed · 0635f8ed · 0635f8ed · 0635f8ed
Commit 0635f8ed authored Mar 14, 2022 by Amandine PERRIN
--- a/PanACoTA/subcommands/annotate.py
+++ b/PanACoTA/subcommands/annotate.py
--- a/PanACoTA/subcommands/corepers.py
+++ b/PanACoTA/subcommands/corepers.py
--- a/PanACoTA/subcommands/pangenome.py
+++ b/PanACoTA/subcommands/pangenome.py
--- a/PanACoTA/subcommands/prepare.py
+++ b/PanACoTA/subcommands/prepare.py
--- a/PanACoTA/subcommands/tree.py
+++ b/PanACoTA/subcommands/tree.py
--- a/PanACoTA/tree_module/__init__.py
+++ b/PanACoTA/tree_module/__init__.py
+"""
+PanACoTA tree_module
+"""
--- a/PanACoTA/tree_module/fastme_func.py
+++ b/PanACoTA/tree_module/fastme_func.py
--- a/PanACoTA/tree_module/fasttree_func.py
+++ b/PanACoTA/tree_module/fasttree_func.py
--- a/PanACoTA/tree_module/iqtree_func.py
+++ b/PanACoTA/tree_module/iqtree_func.py
--- a/PanACoTA/tree_module/quicktree_func.py
+++ b/PanACoTA/tree_module/quicktree_func.py
--- a/PanACoTA/utils.py
+++ b/PanACoTA/utils.py
--- a/PanACoTA/utils_argparse.py
+++ b/PanACoTA/utils_argparse.py
--- a/PanACoTA/utils_pangenome.py
+++ b/PanACoTA/utils_pangenome.py
--- a/README.md
+++ b/README.md
--- a/containers/Dockerfile
+++ b/containers/Dockerfile
--- a/containers/Dockerfile-v1.2.0
+++ b/containers/Dockerfile-v1.2.0
--- a/containers/Singularity
+++ b/containers/Singularity
--- a/doc/source/Makefile
+++ b/doc/source/Makefile
--- a/doc/source/PanACoTA.align_module.rst
+++ b/doc/source/PanACoTA.align_module.rst
--- a/doc/source/PanACoTA.all_modules.rst
+++ b/doc/source/PanACoTA.all_modules.rst
+=====================================
+``PanACoTA.all_modules`` package
+=====================================
+``all`` module
+---------------
+.. automodule:: PanACoTA.subcommands.all_modules
+    :members:
+    :undoc-members:
+    :show-inheritance: