Commit 101afc36 authored by Amandine  PERRIN's avatar Amandine PERRIN
Browse files

build all test images

parent 0e3574aa
Pipeline #15909 failed with stage
in 7 minutes and 56 seconds
......@@ -10,17 +10,17 @@ variables:
before_script:
- docker login -u gitlab-ci-token -p "$CI_BUILD_TOKEN" registry-gitlab.pasteur.fr
# build-test-image:
# only:
# - docker
# stage: build
# script:
# - apk update # ; apk add git ; apk add apt-utils
# # - git checkout master -- requirements.txt
# - docker build --pull -t "$CI_REGISTRY_IMAGE/testing-ubuntu" for_tests
# - docker push "$CI_REGISTRY_IMAGE/testing-ubuntu"
# tags:
# - k8s
build-test-image:
only:
- docker
stage: build
script:
- apk update # ; apk add git ; apk add apt-utils
# - git checkout master -- requirements.txt
- docker build --pull -t "$CI_REGISTRY_IMAGE/testing-ubuntu" for_tests
- docker push "$CI_REGISTRY_IMAGE/testing-ubuntu"
tags:
- k8s
build-install-barrnap:
only:
......
......@@ -16,7 +16,7 @@ RUN apt-get install -y \
RUN pip3 install --upgrade pip
# Install MMseqs2 Version: f05f8c51d6e9c7c0b15fbd533e4b678303f50b3e
# Install MMseqs2 (Version: f05f8c51d6e9c7c0b15fbd533e4b678303f50b3e ?)
WORKDIR /tmp
RUN wget https://mmseqs.com/latest/mmseqs-linux-sse41.tar.gz &&\
tar xvfz mmseqs-linux-sse41.tar.gz &&\
......
......@@ -79,10 +79,8 @@ RUN make clean &&\
# Install FastTree version 2.1.11 Double precision (No SSE3)
WORKDIR /tmp
RUN wget http://www.microbesonline.org/fasttree/FastTree.c &&\
gcc -DOPENMP -fopenmp -DUSE_DOUBLE -Wall -O3 -finline-functions -funroll-loops -o FastTreeMP FastTree.c -lm &&\# ln -s /tmp/FastTre#eMP /usr/local/bin#
# Install FastME FastME 2.1.6.1
gcc -DOPENMP -fopenmp -DUSE_DOUBLE -Wall -O3 -finline-functions -funroll-loops -o FastTreeMP astTree.c -lm &&\
ln -s /tmp/FastTre#eMP /usr/local/bin## Install FastME FastME 2.1.6.1
WORKDIR /tmp
RUN apt-get install -y automake &&\
git clone https://gite.lirmm.fr/atgc/FastME.git
......@@ -92,10 +90,9 @@ RUN ./configure &&\
make install
## Install quicktree
#WORKDIR /tmp
#RUN git clone https://github.com/tseemann/quicktree
#WORKDIR quicktree
#RUN make &&\
# ln -s /tmp/quicktree/quicktree /usr/local/bin
#
\ No newline at end of file
# Install quicktree
WORKDIR /tmp
RUN git clone https://github.com/tseemann/quicktree
WORKDIR quicktree
RUN make &&\
ln -s /tmp/quicktree/quicktree /usr/local/bin
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