build all test images

.gitlab-ci.yml

@@ -10,17 +10,17 @@ variables:
 before_script:
   - docker login -u gitlab-ci-token -p "$CI_BUILD_TOKEN" registry-gitlab.pasteur.fr
 
-# build-test-image:
-#   only:
-#     - docker
-#   stage: build
-#   script:
-#     - apk update # ; apk add git ; apk add apt-utils
-#     # - git checkout master -- requirements.txt
-#     - docker build --pull -t "$CI_REGISTRY_IMAGE/testing-ubuntu" for_tests
-#     - docker push "$CI_REGISTRY_IMAGE/testing-ubuntu"
-#   tags:
-#     - k8s
+build-test-image:
+  only:
+    - docker
+  stage: build
+  script:
+    - apk update # ; apk add git ; apk add apt-utils
+    # - git checkout master -- requirements.txt
+    - docker build --pull -t "$CI_REGISTRY_IMAGE/testing-ubuntu" for_tests
+    - docker push "$CI_REGISTRY_IMAGE/testing-ubuntu"
+  tags:
+    - k8s
 
 build-install-barrnap:
   only:

for_build/mmseqs_and_fastme/Dockerfile

@@ -16,7 +16,7 @@ RUN apt-get install -y \
 RUN pip3 install --upgrade pip
 
 
-# Install MMseqs2 Version: f05f8c51d6e9c7c0b15fbd533e4b678303f50b3e
+# Install MMseqs2 (Version: f05f8c51d6e9c7c0b15fbd533e4b678303f50b3e ?)
 WORKDIR /tmp
 RUN wget https://mmseqs.com/latest/mmseqs-linux-sse41.tar.gz &&\
     tar xvfz mmseqs-linux-sse41.tar.gz &&\

for_tests/Dockerfile

@@ -79,10 +79,8 @@ RUN make clean &&\
 # Install FastTree version 2.1.11 Double precision (No SSE3)
 WORKDIR /tmp
 RUN wget http://www.microbesonline.org/fasttree/FastTree.c &&\
-    gcc -DOPENMP -fopenmp -DUSE_DOUBLE -Wall -O3 -finline-functions -funroll-loops -o FastTreeMP FastTree.c -lm &&\#    ln -s /tmp/FastTre#eMP /usr/local/bin#
-
-
-# Install FastME FastME 2.1.6.1
+    gcc -DOPENMP -fopenmp -DUSE_DOUBLE -Wall -O3 -finline-functions -funroll-loops -o FastTreeMP astTree.c -lm &&\
+    ln -s /tmp/FastTre#eMP /usr/local/bin## Install FastME FastME 2.1.6.1
 WORKDIR /tmp
 RUN apt-get install -y automake  &&\
     git clone https://gite.lirmm.fr/atgc/FastME.git
@@ -92,10 +90,9 @@ RUN ./configure &&\
     make install
 
 
-## Install quicktree
-#WORKDIR /tmp
-#RUN git clone https://github.com/tseemann/quicktree
-#WORKDIR quicktree
-#RUN make &&\
-#    ln -s /tmp/quicktree/quicktree /usr/local/bin
-#
\ No newline at end of file
+# Install quicktree
+WORKDIR /tmp
+RUN git clone https://github.com/tseemann/quicktree
+WORKDIR quicktree
+RUN make &&\
+    ln -s /tmp/quicktree/quicktree /usr/local/bin