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Amandine PERRIN
pipeline_annotation
Commits
101afc36
Commit
101afc36
authored
Oct 07, 2019
by
Amandine PERRIN
Browse files
build all test images
parent
0e3574aa
Pipeline
#15909
failed with stage
in 7 minutes and 56 seconds
Changes
3
Pipelines
1
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.gitlab-ci.yml
View file @
101afc36
...
...
@@ -10,17 +10,17 @@ variables:
before_script
:
-
docker login -u gitlab-ci-token -p "$CI_BUILD_TOKEN" registry-gitlab.pasteur.fr
#
build-test-image:
#
only:
#
- docker
#
stage: build
#
script:
#
- apk update # ; apk add git ; apk add apt-utils
#
# - git checkout master -- requirements.txt
#
- docker build --pull -t "$CI_REGISTRY_IMAGE/testing-ubuntu" for_tests
#
- docker push "$CI_REGISTRY_IMAGE/testing-ubuntu"
#
tags:
#
- k8s
build-test-image
:
only
:
-
docker
stage
:
build
script
:
-
apk update
# ; apk add git ; apk add apt-utils
# - git checkout master -- requirements.txt
-
docker build --pull -t "$CI_REGISTRY_IMAGE/testing-ubuntu" for_tests
-
docker push "$CI_REGISTRY_IMAGE/testing-ubuntu"
tags
:
-
k8s
build-install-barrnap
:
only
:
...
...
for_build/mmseqs_and_fastme/Dockerfile
View file @
101afc36
...
...
@@ -16,7 +16,7 @@ RUN apt-get install -y \
RUN
pip3
install
--upgrade
pip
# Install MMseqs2 Version: f05f8c51d6e9c7c0b15fbd533e4b678303f50b3e
# Install MMseqs2
(
Version: f05f8c51d6e9c7c0b15fbd533e4b678303f50b3e
?)
WORKDIR
/tmp
RUN
wget https://mmseqs.com/latest/mmseqs-linux-sse41.tar.gz
&&
\
tar
xvfz mmseqs-linux-sse41.tar.gz
&&
\
...
...
for_tests/Dockerfile
View file @
101afc36
...
...
@@ -79,10 +79,8 @@ RUN make clean &&\
# Install FastTree version 2.1.11 Double precision (No SSE3)
WORKDIR
/tmp
RUN
wget http://www.microbesonline.org/fasttree/FastTree.c
&&
\
gcc
-DOPENMP
-fopenmp
-DUSE_DOUBLE
-Wall
-O3
-finline-functions
-funroll-loops
-o
FastTreeMP FastTree.c
-lm
&&
\#
ln
-s
/tmp/FastTre#eMP /usr/local/bin#
# Install FastME FastME 2.1.6.1
gcc
-DOPENMP
-fopenmp
-DUSE_DOUBLE
-Wall
-O3
-finline-functions
-funroll-loops
-o
FastTreeMP astTree.c
-lm
&&
\
ln
-s
/tmp/FastTre#eMP /usr/local/bin## Install FastME FastME 2.1.6.1
WORKDIR
/tmp
RUN
apt-get
install
-y
automake
&&
\
git clone https://gite.lirmm.fr/atgc/FastME.git
...
...
@@ -92,10 +90,9 @@ RUN ./configure &&\
make
install
## Install quicktree
#WORKDIR /tmp
#RUN git clone https://github.com/tseemann/quicktree
#WORKDIR quicktree
#RUN make &&\
# ln -s /tmp/quicktree/quicktree /usr/local/bin
#
\ No newline at end of file
# Install quicktree
WORKDIR
/tmp
RUN
git clone https://github.com/tseemann/quicktree
WORKDIR
quicktree
RUN
make
&&
\
ln
-s
/tmp/quicktree/quicktree /usr/local/bin
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