Commit 37f15ccd authored 4 years ago by Amandine PERRIN

Add functional tests for annotate module

parent 715231c3

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PanACoTA/annotate_module/format_prodigal.py 1 addition, 1 deletion

PanACoTA/annotate_module/format_prodigal.py
PanACoTA/annotate_module/general_format_functions.py 3 additions, 2 deletions

PanACoTA/annotate_module/general_format_functions.py
PanACoTA/subcommands/annotate.py 21 additions, 13 deletions

PanACoTA/subcommands/annotate.py
PanACoTA/utils.py 1 addition, 2 deletions

PanACoTA/utils.py
test/data/annotate/exp_files/B2_A3_5.fasta-changeName.fna-prodigalRes/ESCO.1116.00002.faa 753 additions, 0 deletions

...A3_5.fasta-changeName.fna-prodigalRes/ESCO.1116.00002.faa
test/data/annotate/exp_files/B2_A3_5.fasta-changeName.fna-prodigalRes/ESCO.1116.00002.ffn 1727 additions, 0 deletions

...A3_5.fasta-changeName.fna-prodigalRes/ESCO.1116.00002.ffn
test/data/annotate/exp_files/B2_A3_5.fasta-changeName.fna-prodigalRes/ESCO.1116.00002.gff 110 additions, 0 deletions

...A3_5.fasta-changeName.fna-prodigalRes/ESCO.1116.00002.gff
test/data/annotate/exp_files/B2_A3_5.fasta-changeName.fna-prokkaRes/ESCO.1116.00002.err 568 additions, 0 deletions

...2_A3_5.fasta-changeName.fna-prokkaRes/ESCO.1116.00002.err
test/data/annotate/exp_files/B2_A3_5.fasta-changeName.fna-prokkaRes/ESCO.1116.00002.faa 733 additions, 0 deletions

...2_A3_5.fasta-changeName.fna-prokkaRes/ESCO.1116.00002.faa
test/data/annotate/exp_files/B2_A3_5.fasta-changeName.fna-prokkaRes/ESCO.1116.00002.ffn 1940 additions, 0 deletions

...2_A3_5.fasta-changeName.fna-prokkaRes/ESCO.1116.00002.ffn
test/data/annotate/exp_files/B2_A3_5.fasta-changeName.fna-prokkaRes/ESCO.1116.00002.fna 2018 additions, 0 deletions

...2_A3_5.fasta-changeName.fna-prokkaRes/ESCO.1116.00002.fna
test/data/annotate/exp_files/B2_A3_5.fasta-changeName.fna-prokkaRes/ESCO.1116.00002.fsa 2018 additions, 0 deletions

...2_A3_5.fasta-changeName.fna-prokkaRes/ESCO.1116.00002.fsa
test/data/annotate/exp_files/B2_A3_5.fasta-changeName.fna-prokkaRes/ESCO.1116.00002.gbk 3592 additions, 0 deletions

...2_A3_5.fasta-changeName.fna-prokkaRes/ESCO.1116.00002.gbk
test/data/annotate/exp_files/B2_A3_5.fasta-changeName.fna-prokkaRes/ESCO.1116.00002.gff 2120 additions, 0 deletions

...2_A3_5.fasta-changeName.fna-prokkaRes/ESCO.1116.00002.gff
test/data/annotate/exp_files/B2_A3_5.fasta-changeName.fna-prokkaRes/ESCO.1116.00002.log 137 additions, 0 deletions

...2_A3_5.fasta-changeName.fna-prokkaRes/ESCO.1116.00002.log
test/data/annotate/exp_files/B2_A3_5.fasta-changeName.fna-prokkaRes/ESCO.1116.00002.sqn 8990 additions, 0 deletions

...2_A3_5.fasta-changeName.fna-prokkaRes/ESCO.1116.00002.sqn
test/data/annotate/exp_files/B2_A3_5.fasta-changeName.fna-prokkaRes/ESCO.1116.00002.tbl 608 additions, 0 deletions

...2_A3_5.fasta-changeName.fna-prokkaRes/ESCO.1116.00002.tbl
test/data/annotate/exp_files/B2_A3_5.fasta-changeName.fna-prokkaRes/ESCO.1116.00002.tsv 96 additions, 0 deletions

...2_A3_5.fasta-changeName.fna-prokkaRes/ESCO.1116.00002.tsv
test/data/annotate/exp_files/B2_A3_5.fasta-changeName.fna-prokkaRes/ESCO.1116.00002.txt 5 additions, 0 deletions

...2_A3_5.fasta-changeName.fna-prokkaRes/ESCO.1116.00002.txt
test/data/annotate/exp_files/H299_H561.fasta-prodigalRes/ESCO.1015.00001.faa 100 additions, 0 deletions

...exp_files/H299_H561.fasta-prodigalRes/ESCO.1015.00001.faa

with 25541 additions and 18 deletions

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