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Commit 5026f90a authored by Amandine  PERRIN's avatar Amandine PERRIN
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update tests for annotation function for prokka

parent dd8bed3c
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......@@ -325,7 +325,7 @@ def test_check_prokka_wrong_cont():
nbcont = 10
assert not afunc.check_prokka(outdir, logf, name, gpath, nbcont, logger[1])
msg = ("prokka_out_for_test original_name.fna: no matching number of contigs; "
"nbcontig=10; in tbl =7")
"nbcontig=10; in tbl =6")
q = logger[0]
assert q.qsize() == 1
assert q.get().message == msg
......@@ -421,7 +421,7 @@ def test_check_prokka_tbl_crispr_newversion():
shutil.copyfile(ffnfile, os.path.join(out_dir, name + ".ffn"))
logf = os.path.join(GENEPATH, "prokka.log")
gpath = "path/to/nogenome/original_name.fna"
nbcont = 7
nbcont = 6
assert afunc.check_prokka(out_dir, logf, name, gpath, nbcont, logger[1])
......@@ -435,7 +435,7 @@ def test_check_prokka_ok():
name = "prokka_out_for_test"
logf = os.path.join(GENEPATH, "prokka.log")
gpath = "path/to/nogenome/original_name.fna"
nbcont = 7
nbcont = 6
assert afunc.check_prokka(outdir, logf, name, gpath, nbcont, logger[1])
......@@ -450,7 +450,7 @@ def test_run_prokka_out_exists_ok():
cores_prokka = 1
name = "prokka_out_for_test"
force = False
nbcont = 7
nbcont = 6
arguments = (gpath, TEST_DIR, cores_prokka, name, force, nbcont, None, logger[0])
assert afunc.run_prokka(arguments)
......@@ -491,7 +491,7 @@ def test_run_prokka_out_exists_error():
gpath = "path/to/nogenome/original_name-error"
cores_prokka = 1
force = False
nbcont = 7
nbcont = 6
arguments = (gpath, GENEPATH, cores_prokka, name, force, nbcont, None, logger[0])
assert not afunc.run_prokka(arguments)
q = logger[0]
......
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