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Commit 55273dc3 authored by Amandine  PERRIN's avatar Amandine PERRIN
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Add installation of mmseqs in test machine

parent f4d32e52
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......@@ -7,7 +7,8 @@ RUN apt-get update &&\
# Install package needed
RUN apt-get install -y \
wget \
python3-pip
python3-pip \
cmake # to install mmseqs
# Update pip
RUN pip3 install --upgrade pip
......@@ -33,3 +34,12 @@ RUN apt-get install -y\
RUN git clone https://github.com/tseemann/prokka.git
RUN /tmp/prokka/bin/prokka --setupdb
RUN ln -s /tmp/prokka/bin/prokka /usr/local/bin
# Install mmseqs2
WORKDIR /tmp
RUN git clone https://github.com/soedinglab/MMseqs2.git
WORKDIR /tmp/MMseqs2
RUN mkdir build && cd build
RUN cmake -DCMAKE_BUILD_TYPE=RELEASE -DCMAKE_INSTALL_PREFIX=. ..
RUN make && make install
RUN ln -s /tmp/MMseqs2/build/bin/mmseqs /usr/local/bin
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