# PanACOTA is a software providing tools for large scale bacterial comparative #
PanACOTA is a software providing tools for large scale bacterial comparative genomics. From a set of complete and/or draft genomes, you can:
# genomics. From a set of complete and/or draft genomes, you can: #
# - Do a quality control of your strains, to eliminate poor quality #
- Do a quality control of your strains, to eliminate poor quality genomes, which would not give any information for the comparative study
# genomes, which would not give any information for the comparative study #
- Uniformly annotate all genomes
# - Uniformly annotate all genomes #
- Do a Pan-genome
# - Do a Pan-genome #
- Do a Core or Persistent genome
# - Do a Core or Persistent genome #
- Align all Core/Persistent families
# - Align all Core/Persistent families #
- Infer a phylogenetic tree from the Core/Persistent families
# - Infer a phylogenetic tree from the Core/Persistent families #
# #
PanACOTA is free software: you can redistribute it and/or modify it under the terms of the Affero GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
# PanACOTA is free software: you can redistribute it and/or modify it under the #
PanACOTA is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Affero GNU General Public License for more details.
# terms of the Affero GNU General Public License as published by the Free #
# Software Foundation, either version 3 of the License, or (at your option) #
You should have received a copy of the Affero GNU General Public License along with PanACOTA (COPYING file). If not, see <https://www.gnu.org/licenses/>.
