PanACOTA is a software providing tools for large scale bacterial comparative genomics. From a set of complete and/or draft genomes, you can:
- Do a quality control of your strains, to eliminate poor quality genomes, which would not give any information for the comparative study
- Uniformly annotate all genomes
- Do a Pan-genome
- Do a Core or Persistent genome
- Align all Core/Persistent families
- Infer a phylogenetic tree from the Core/Persistent families
PanACOTA is free software: you can redistribute it and/or modify it under the terms of the Affero GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
PanACOTA is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Affero GNU General Public License for more details.
You should have received a copy of the Affero GNU General Public License along with PanACOTA (COPYING file). If not, see <https://www.gnu.org/licenses/>.