Commit 80e7c8ec authored by Amandine  PERRIN's avatar Amandine PERRIN
Browse files

changes for building all images

parent 09da0604
Pipeline #11613 failed with stage
in 5 minutes and 14 seconds
from ubuntu:16.04 from ubuntu:latest
# Update apt-get packages # Update apt-get packages
RUN apt-get update &&\ RUN apt-get update &&\
...@@ -6,18 +6,19 @@ RUN apt-get update &&\ ...@@ -6,18 +6,19 @@ RUN apt-get update &&\
# Install package needed # Install package needed
RUN apt-get install -y \ RUN apt-get install -y \
wget \ python3 \
python3-pip \ python3-pip \
git \
wget \
libdatetime-perl \ libdatetime-perl \
libxml-simple-perl \ libxml-simple-perl \
libdigest-md5-perl \ libdigest-md5-perl \
git \
default-jre \ default-jre \
bioperl bioperl
# Update pip
RUN pip3 install --upgrade pip RUN pip3 install --upgrade pip
# Install barrnap # Install barrnap
WORKDIR /tmp WORKDIR /tmp
RUN wget https://github.com/tseemann/barrnap/archive/0.8.tar.gz &&\ RUN wget https://github.com/tseemann/barrnap/archive/0.8.tar.gz &&\
......
from ubuntu:16.04 from ubuntu:latest
# Update apt-get packages # Update apt-get packages
RUN apt-get update &&\ RUN apt-get update &&\
...@@ -6,20 +6,20 @@ RUN apt-get update &&\ ...@@ -6,20 +6,20 @@ RUN apt-get update &&\
# Install package needed # Install package needed
RUN apt-get install -y \ RUN apt-get install -y \
python3 \
python3-pip \
wget \ wget \
python3-pip git \
# Update pip
RUN pip3 install --upgrade pip
RUN apt-get install -y\
libdatetime-perl \ libdatetime-perl \
libxml-simple-perl \ libxml-simple-perl \
libdigest-md5-perl \ libdigest-md5-perl \
git \
default-jre \ default-jre \
bioperl bioperl
# Update pip
RUN pip3 install --upgrade pip
# Install mafft 7.313 # Install mafft 7.313
RUN rm /usr/bin/mafft # remove mafft installed with bioperl RUN rm /usr/bin/mafft # remove mafft installed with bioperl
WORKDIR /tmp WORKDIR /tmp
...@@ -29,4 +29,4 @@ RUN wget https://mafft.cbrc.jp/alignment/software/mafft-7.313-with-extensions-sr ...@@ -29,4 +29,4 @@ RUN wget https://mafft.cbrc.jp/alignment/software/mafft-7.313-with-extensions-sr
WORKDIR /tmp/mafft-7.313-with-extensions/core WORKDIR /tmp/mafft-7.313-with-extensions/core
RUN make clean &&\ RUN make clean &&\
make &&\ make &&\
make install make install
\ No newline at end of file
from ubuntu:16.04 from ubuntu:latest
# Update apt-get packages # Update apt-get packages
...@@ -9,7 +9,9 @@ RUN apt-get update &&\ ...@@ -9,7 +9,9 @@ RUN apt-get update &&\
# Install package needed and update pip # Install package needed and update pip
RUN apt-get install -y \ RUN apt-get install -y \
wget \ wget \
python3-pip python3 \
python3-pip \
git
RUN pip3 install --upgrade pip RUN pip3 install --upgrade pip
......
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