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Amandine PERRIN
pipeline_annotation
Commits
842a93d2
Commit
842a93d2
authored
Apr 30, 2019
by
Amandine PERRIN
Browse files
Adapt dockerfile to buid installation of mafft
parent
4fbd9169
Pipeline
#11615
passed with stage
in 6 minutes and 19 seconds
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1
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for_build/mafft/Dockerfile
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842a93d2
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@@ -9,16 +9,19 @@ RUN apt-get install -y \
python3
\
python3-pip
\
wget
\
git
\
libdatetime-perl
\
libxml-simple-perl
\
libdigest-md5-perl
\
default-jre
\
bioperl
git
# Update pip
RUN
pip3
install
--upgrade
pip
# Install packages to install mafft
RUN
apt-get
install
-y
\
libdatetime-perl
\
libxml-simple-perl
\
libdigest-md5-perl
\
default-jre
\
bioperl
# Install mafft 7.313
RUN
rm
/usr/bin/mafft
# remove mafft installed with bioperl
...
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