Skip to content
GitLab
Menu
Projects
Groups
Snippets
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Amandine PERRIN
pipeline_annotation
Commits
8a574b83
Commit
8a574b83
authored
Apr 30, 2019
by
Amandine PERRIN
Browse files
Add dockerfile to buid image with only prodigal
parent
842a93d2
Pipeline
#11616
passed with stage
in 4 minutes and 18 seconds
Changes
2
Pipelines
1
Hide whitespace changes
Inline
Side-by-side
.gitlab-ci.yml
View file @
8a574b83
...
...
@@ -10,74 +10,85 @@ variables:
before_script
:
-
docker login -u gitlab-ci-token -p "$CI_BUILD_TOKEN" registry-gitlab.pasteur.fr
build-test-image
:
only
:
-
docker
stage
:
build
script
:
-
apk update
# ; apk add git ; apk add apt-utils
# - git checkout master -- requirements.txt
-
docker build --pull -t "$CI_REGISTRY_IMAGE/testing-ubuntu" for_tests
-
docker push "$CI_REGISTRY_IMAGE/testing-ubuntu"
tags
:
-
k8s
#
build-test-image:
#
only:
#
- docker
#
stage: build
#
script:
#
- apk update # ; apk add git ; apk add apt-utils
#
# - git checkout master -- requirements.txt
#
- docker build --pull -t "$CI_REGISTRY_IMAGE/testing-ubuntu" for_tests
#
- docker push "$CI_REGISTRY_IMAGE/testing-ubuntu"
#
tags:
#
- k8s
build-install-barrnap
:
only
:
-
docker
stage
:
build
script
:
-
apk update
#; apk add git
# - git checkout master -- requirements.txt
-
docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu-barrnaponly" for_build/barrnap_only
-
docker push "$CI_REGISTRY_IMAGE/install-ubuntu-barrnaponly"
tags
:
-
k8s
#
build-install-barrnap:
#
only:
#
- docker
#
stage: build
#
script:
#
- apk update #; apk add git
#
# - git checkout master -- requirements.txt
#
- docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu-barrnaponly" for_build/barrnap_only
#
- docker push "$CI_REGISTRY_IMAGE/install-ubuntu-barrnaponly"
#
tags:
#
- k8s
build-install-annote-and-quicktree
:
only
:
-
docker
stage
:
build
script
:
-
apk update
#; apk add git
# - git checkout master -- requirements.txt
-
docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree" for_build/annote_and_1tree
-
docker push "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree"
tags
:
-
k8s
#
build-install-annote-and-quicktree:
#
only:
#
- docker
#
stage: build
#
script:
#
- apk update #; apk add git
#
# - git checkout master -- requirements.txt
#
- docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree" for_build/annote_and_1tree
#
- docker push "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree"
#
tags:
#
- k8s
build-ubuntu
:
only
:
-
docker
stage
:
build
script
:
-
apk update
# ; apk add git
# - git checkout master -- requirements.txt
-
docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu" for_build/ubuntu
-
docker push "$CI_REGISTRY_IMAGE/install-ubuntu"
tags
:
-
k8s
#
build-ubuntu:
#
only:
#
- docker
#
stage: build
#
script:
#
- apk update # ; apk add git
#
# - git checkout master -- requirements.txt
#
- docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu" for_build/ubuntu
#
- docker push "$CI_REGISTRY_IMAGE/install-ubuntu"
#
tags:
#
- k8s
build-mafft
:
only
:
-
docker
stage
:
build
script
:
-
apk update
# ; apk add git
# - git checkout master -- requirements.txt
-
docker build --pull -t "$CI_REGISTRY_IMAGE/install-mafft" for_build/mafft
-
docker push "$CI_REGISTRY_IMAGE/install-mafft"
tags
:
-
k8s
# build-mafft:
# only:
# - docker
# stage: build
# script:
# - apk update # ; apk add git
# # - git checkout master -- requirements.txt
# - docker build --pull -t "$CI_REGISTRY_IMAGE/install-mafft" for_build/mafft
# - docker push "$CI_REGISTRY_IMAGE/install-mafft"
# tags:
# - k8s
# build-mmseqs_and_fastme:
# only:
# - docker
# stage: build
# script:
# - apk update # ; apk add git
# # - git checkout master -- requirements.txt
# - docker build --pull -t "$CI_REGISTRY_IMAGE/install-mmseqs-fastme" for_build/mmseqs_and_fastme
# - docker push "$CI_REGISTRY_IMAGE/install-mmseqs-fastme"
# tags:
# - k8s
build-
mmseqs_and_fastme
:
build-
install-prodigal
:
only
:
-
docker
stage
:
build
script
:
-
apk update
# ; apk add git
# - git checkout master -- requirements.txt
-
docker build --pull -t "$CI_REGISTRY_IMAGE/install-mmseqs-fastme" for_build/mmseqs_and_fastme
-
docker push "$CI_REGISTRY_IMAGE/install-mmseqs-fastme"
-
apk update
-
docker build --pull -t "$CI_REGISTRY_IMAGE/install-prodigal" for_build/prodigal
-
docker push "$CI_REGISTRY_IMAGE/install-prodigal"
tags
:
-
k8s
for_build/prodigal/Dockerfile
0 → 100644
View file @
8a574b83
from
ubuntu:latest
# Update apt-get packages
RUN
apt-get update
&&
\
apt-get
-y
upgrade
# Install package needed
RUN
apt-get
install
-y
\
python3
\
git
\
python3-pip
# Upgrade pip
RUN
pip3
install
--upgrade
pip
# Install prodigal
RUN
git clone https://github.com/hyattpd/Prodigal.git
WORKDIR
Prodigal
RUN
make
install
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment