Add dockerfile to buid image with only prodigal

.gitlab-ci.yml

@@ -10,74 +10,85 @@ variables:
 before_script:
   - docker login -u gitlab-ci-token -p "$CI_BUILD_TOKEN" registry-gitlab.pasteur.fr
 
-build-test-image:
-  only:
-    - docker
-  stage: build
-  script:
-    - apk update # ; apk add git ; apk add apt-utils
-    # - git checkout master -- requirements.txt
-    - docker build --pull -t "$CI_REGISTRY_IMAGE/testing-ubuntu" for_tests
-    - docker push "$CI_REGISTRY_IMAGE/testing-ubuntu"
-  tags:
-    - k8s
+# build-test-image:
+#   only:
+#     - docker
+#   stage: build
+#   script:
+#     - apk update # ; apk add git ; apk add apt-utils
+#     # - git checkout master -- requirements.txt
+#     - docker build --pull -t "$CI_REGISTRY_IMAGE/testing-ubuntu" for_tests
+#     - docker push "$CI_REGISTRY_IMAGE/testing-ubuntu"
+#   tags:
+#     - k8s
 
-build-install-barrnap:
-  only:
-    - docker
-  stage: build
-  script:
-    - apk update #; apk add git
-    # - git checkout master -- requirements.txt
-    - docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu-barrnaponly" for_build/barrnap_only
-    - docker push "$CI_REGISTRY_IMAGE/install-ubuntu-barrnaponly"
-  tags:
-    - k8s
+# build-install-barrnap:
+#   only:
+#     - docker
+#   stage: build
+#   script:
+#     - apk update #; apk add git
+#     # - git checkout master -- requirements.txt
+#     - docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu-barrnaponly" for_build/barrnap_only
+#     - docker push "$CI_REGISTRY_IMAGE/install-ubuntu-barrnaponly"
+#   tags:
+#     - k8s
 
-build-install-annote-and-quicktree:
-  only:
-    - docker
-  stage: build
-  script:
-    - apk update #; apk add git
-    # - git checkout master -- requirements.txt
-    - docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree" for_build/annote_and_1tree
-    - docker push "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree"
-  tags:
-    - k8s
+# build-install-annote-and-quicktree:
+#   only:
+#     - docker
+#   stage: build
+#   script:
+#     - apk update #; apk add git
+#     # - git checkout master -- requirements.txt
+#     - docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree" for_build/annote_and_1tree
+#     - docker push "$CI_REGISTRY_IMAGE/install-ubuntu-annote-quicktree"
+#   tags:
+#     - k8s
 
-build-ubuntu:
-  only:
-    - docker
-  stage: build
-  script:
-    - apk update  # ; apk add git
-    # - git checkout master -- requirements.txt
-    - docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu" for_build/ubuntu
-    - docker push "$CI_REGISTRY_IMAGE/install-ubuntu"
-  tags:
-    - k8s
+# build-ubuntu:
+#   only:
+#     - docker
+#   stage: build
+#   script:
+#     - apk update  # ; apk add git
+#     # - git checkout master -- requirements.txt
+#     - docker build --pull -t "$CI_REGISTRY_IMAGE/install-ubuntu" for_build/ubuntu
+#     - docker push "$CI_REGISTRY_IMAGE/install-ubuntu"
+#   tags:
+#     - k8s
 
-build-mafft:
-  only:
-    - docker
-  stage: build
-  script:
-    - apk update # ; apk add git
-    # - git checkout master -- requirements.txt
-    - docker build --pull -t "$CI_REGISTRY_IMAGE/install-mafft" for_build/mafft
-    - docker push "$CI_REGISTRY_IMAGE/install-mafft"
-  tags:
-    - k8s
+# build-mafft:
+#   only:
+#     - docker
+#   stage: build
+#   script:
+#     - apk update # ; apk add git
+#     # - git checkout master -- requirements.txt
+#     - docker build --pull -t "$CI_REGISTRY_IMAGE/install-mafft" for_build/mafft
+#     - docker push "$CI_REGISTRY_IMAGE/install-mafft"
+#   tags:
+#     - k8s
+
+# build-mmseqs_and_fastme:
+#   only:
+#     - docker
+#   stage: build
+#   script:
+#     - apk update # ; apk add git
+#     # - git checkout master -- requirements.txt
+#     - docker build --pull -t "$CI_REGISTRY_IMAGE/install-mmseqs-fastme" for_build/mmseqs_and_fastme
+#     - docker push "$CI_REGISTRY_IMAGE/install-mmseqs-fastme"
+#   tags:
+#     - k8s
 
-build-mmseqs_and_fastme:
+build-install-prodigal:
   only:
     - docker
   stage: build
   script:
-    - apk update # ; apk add git
-    # - git checkout master -- requirements.txt
-    - docker build --pull -t "$CI_REGISTRY_IMAGE/install-mmseqs-fastme" for_build/mmseqs_and_fastme
-    - docker push "$CI_REGISTRY_IMAGE/install-mmseqs-fastme"
+    - apk update
+    - docker build --pull -t "$CI_REGISTRY_IMAGE/install-prodigal" for_build/prodigal
+    - docker push "$CI_REGISTRY_IMAGE/install-prodigal"
   tags:
     - k8s

for_build/prodigal/Dockerfile

+from ubuntu:latest
+
+# Update apt-get packages
+RUN apt-get update &&\
+    apt-get -y upgrade
+
+# Install package needed
+RUN apt-get install -y \
+        python3\
+        git \
+        python3-pip
+
+
+# Upgrade pip
+RUN pip3 install --upgrade pip
+
+# Install prodigal
+RUN git clone https://github.com/hyattpd/Prodigal.git
+WORKDIR Prodigal
+RUN make install