It will replace your file panacota.img by a new one corresponding to the latest version.
### <a name="conda"></a> From conda
Be careful while using conda, especially if you are not familiar with it. We advise to install PanACoTA in a dedicated conda environment, in order to avoid unwanted interactions with other softwares (like needed versions of dependencies automatically installed by conda). To install the package, use `conda install -c bioconda panacota`. But, as described in [conda documentation](https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html#id6), we advise to install it with:
# Create an environment: This creates the 'myenv' environment in '/envs/'. No packages will be installed in this environment.
conda create --name myenv
# Activate the environment
conda activate myenv
# Install PanACoTA
conda install -c bioconda panacota
# When you have finished using PanACoTA, deactivate environment
conda deactivate
### From zip version
For people wanting to download source code of a specific version, we provide releases. You can download last one here: [](https://github.com/gem-pasteur/PanACoTA/releases)
It will replace your file ``panacota.img`` by a new one corresponding to the latest version.
From conda
**********
Be careful while using conda, especially if you are not familiar with it. We advise to install PanACoTA in a dedicated conda environment, in order to avoid unwanted interactions with other softwares (like needed versions of dependencies automatically installed by conda). To install the package, use ``conda install -c bioconda panacota``. But, as described in `conda documentation <https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html#id6>`_, we advise to install it with:
.... code-block:: bash
source
# Create an environment: This creates the 'myenv' environment in '/envs/'. No packages will be installed in this environment.
conda create --name myenv
# Activate the environment
conda activate myenv
# Install PanACoTA
conda install -c bioconda panacota
# When you have finished using PanACoTA, deactivate environment
