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Commit a8b816f3 authored by Amandine  PERRIN's avatar Amandine PERRIN
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update versions in dockerfile

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...@@ -73,7 +73,7 @@ RUN git clone https://github.com/tseemann/prokka.git ...@@ -73,7 +73,7 @@ RUN git clone https://github.com/tseemann/prokka.git
RUN /install_dir/prokka/bin/prokka --setupdb &&\ RUN /install_dir/prokka/bin/prokka --setupdb &&\
ln -s /install_dir/prokka/bin/prokka /usr/local/bin ln -s /install_dir/prokka/bin/prokka /usr/local/bin
# install tbl2asn (used by prokka) # install tbl2asn (used by prokka)
RUN wget -O tbl2asn.gz ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/linux.tbl2asn.gz &&\ RUN wget -O tbl2asn.gz https://ftp.ncbi.nlm.nih.gov/asn1-converters/by_program/table2asn/linux64.table2asn.gz &&\
gunzip tbl2asn.gz &&\ gunzip tbl2asn.gz &&\
chmod +x tbl2asn &&\ chmod +x tbl2asn &&\
ln -s /install_dir/tbl2asn /usr/local/bin ln -s /install_dir/tbl2asn /usr/local/bin
...@@ -113,9 +113,9 @@ WORKDIR /install_dir ...@@ -113,9 +113,9 @@ WORKDIR /install_dir
RUN apt-get install -y automake &&\ RUN apt-get install -y automake &&\
git clone https://gite.lirmm.fr/atgc/FastME.git git clone https://gite.lirmm.fr/atgc/FastME.git
WORKDIR /install_dir/FastME/tarball WORKDIR /install_dir/FastME/tarball
RUN tar xzf fastme-2.1.6.2.tar.gz &&\ RUN tar xzf fastme-2.1.6.4.tar.gz &&\
rm fastme-2.1.6.2.tar.gz &&\ rm fastme-2.1.6.4.tar.gz &&\
ln -s /install_dir/FastME/tarball/fastme-2.1.6.2/binaries/fastme-2.1.6.2-linux64-omp /usr/local/bin/fastme ln -s /install_dir/FastME/tarball/fastme-2.1.6.2/binaries/fastme-2.1.6.4-linux64-omp /usr/local/bin/fastme
# Install quicktree # Install quicktree
WORKDIR /install_dir WORKDIR /install_dir
......
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