Commit c98d5826 authored by Amandine  PERRIN's avatar Amandine PERRIN
Browse files

update blastp installation for prokka in all dockerfiles (for_build)

parent 0e658f5f
Pipeline #23659 failed with stage
in 8 minutes and 12 seconds
from ubuntu:latest
from ubuntu:18.04
# Update apt-get packages
RUN apt-get update &&\
apt-get -y upgrade
# Install package needed
# Install packages needed and update pip
RUN apt-get install -y \
python3\
git \
wget \
python3 \
python3-pip
# Upgrade pip
RUN pip3 install --upgrade pip
# Update makeblastdb for prokka
# Update makeblastdb and blastp for prokka
WORKDIR /tmp
RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/ncbi-blast-2.9.0+-x64-linux.tar.gz &&\
tar zxvpf ncbi-blast-2.9.0+-x64-linux.tar.gz &&\
cp /tmp/ncbi-blast-2.9.0+/bin/makeblastdb /usr/local/bin/ &&\
rm ncbi-blast-2.9.0+-x64-linux.tar.gz
RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/ncbi-blast-2.10.0+-x64-linux.tar.gz &&\
tar zxvpf ncbi-blast-2.10.0+-x64-linux.tar.gz &&\
cp /tmp/ncbi-blast-2.10.0+/bin/makeblastdb /usr/local/bin/ &&\
cp /tmp/ncbi-blast-2.10.0+/bin/blastp /usr/local/bin/ &&\
rm ncbi-blast-2.10.0+-x64-linux.tar.gz
# Install prokka:
......
from ubuntu:latest
from ubuntu:18.04
# Update apt-get packages
RUN apt-get update &&\
......
from ubuntu:latest
from ubuntu:18.04
# Update apt-get packages
RUN apt-get update &&\
......
from ubuntu:latest
from ubuntu:18.04
# Update apt-get packages
RUN apt-get update &&\
......
......@@ -10,6 +10,7 @@ RUN apt-get install -y \
wget \
python3 \
python3-pip
# Upgrade pip
RUN pip3 install --upgrade pip
......
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