Commit d40ea0d7 authored by Amandine  PERRIN's avatar Amandine PERRIN
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remove licence files from master branch

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#!/usr/bin/env python3
# coding: utf-8
# ###############################################################################
# This file is part of PanACOTA. #
# #
# Authors: Amandine Perrin #
# Copyright © 2018-2020 Institut Pasteur (Paris). #
# See the COPYRIGHT file for details. #
# #
# PanACOTA is a software providing tools for large scale bacterial comparative #
# genomics. From a set of complete and/or draft genomes, you can: #
# - Do a quality control of your strains, to eliminate poor quality #
# genomes, which would not give any information for the comparative study #
# - Uniformly annotate all genomes #
# - Do a Pan-genome #
# - Do a Core or Persistent genome #
# - Align all Core/Persistent families #
# - Infer a phylogenetic tree from the Core/Persistent families #
# #
# PanACOTA is free software: you can redistribute it and/or modify it under the #
# terms of the Affero GNU General Public License as published by the Free #
# Software Foundation, either version 3 of the License, or (at your option) #
# any later version. #
# #
# PanACOTA is distributed in the hope that it will be useful, but WITHOUT ANY #
# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS #
# FOR A PARTICULAR PURPOSE. See the Affero GNU General Public License #
# for more details. #
# #
# You should have received a copy of the Affero GNU General Public License #
# along with PanACOTA (COPYING file). #
# If not, see <https://www.gnu.org/licenses/>. #
# ###############################################################################
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\ No newline at end of file
genomeAPCAT/__init__.py
genomeAPCAT/utils.py
genomeAPCAT/utils_pangenome.py
genomeAPCAT/align_module/__init__.py
genomeAPCAT/align_module/alignment.py
genomeAPCAT/align_module/get_seqs.py
genomeAPCAT/align_module/pan_to_pergenome.py
genomeAPCAT/align_module/post_align.py
genomeAPCAT/annote_module/__init__.py
genomeAPCAT/annote_module/format_functions.py
genomeAPCAT/annote_module/genome_seq_functions.py
genomeAPCAT/annote_module/prokka_functions.py
genomeAPCAT/corepers_module/__init__.py
genomeAPCAT/corepers_module/persistent_functions.py
genomeAPCAT/pangenome_module/__init__.py
genomeAPCAT/pangenome_module/mmseqs_functions.py
genomeAPCAT/pangenome_module/post_treatment.py
genomeAPCAT/pangenome_module/protein_seq_functions.py
genomeAPCAT/subcommands/__init__.py
genomeAPCAT/subcommands/align.py
genomeAPCAT/subcommands/annote.py
genomeAPCAT/subcommands/corepers.py
genomeAPCAT/subcommands/pangenome.py
genomeAPCAT/subcommands/tree.py
genomeAPCAT/tree_module/__init__.py
genomeAPCAT/tree_module/fastme_func.py
genomeAPCAT/tree_module/fasttree_func.py
genomeAPCAT/tree_module/quicktree_func.py
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