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Commit de2ddde0 authored by Amandine PERRIN's avatar Amandine PERRIN
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adapt functional tests to new default iqtree

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Pipeline #41189 passed
Stage: test
Stage: coverage
Stage: doc
Stage: deploy
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test/test_functional/test_tree.py
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...@@ -277,7 +277,7 @@ def test_main_iqtree2_newdir(capsys): ...@@ -277,7 +277,7 @@ def test_main_iqtree2_newdir(capsys):
"-T 1 -m GTR -B 1000 --boot-trees --seqtype DNA " "-T 1 -m GTR -B 1000 --boot-trees --seqtype DNA "
"--prefix test/data/tree/generated_by_func_tests/" "--prefix test/data/tree/generated_by_func_tests/"
"test_iqtree2/exp_pers4genomes.grp.aln.iqtree_tree " "test_iqtree2/exp_pers4genomes.grp.aln.iqtree_tree "
"-quiet") in " ".join(iq_lines) "--quiet") in " ".join(iq_lines)
assert ("Alignment has 4 sequences with 6438 columns, " assert ("Alignment has 4 sequences with 6438 columns, "
"81 distinct patterns") in " ".join(iq_lines) "81 distinct patterns") in " ".join(iq_lines)
assert "Analysis results written to:" in " ".join(iq_lines) assert "Analysis results written to:" in " ".join(iq_lines)
...@@ -303,7 +303,7 @@ def test_main_iqtree2_newdir(capsys): ...@@ -303,7 +303,7 @@ def test_main_iqtree2_newdir(capsys):
assert ("IQtree command: iqtree2 -s test/data/align/exp_files/exp_pers4genomes.grp.aln " assert ("IQtree command: iqtree2 -s test/data/align/exp_files/exp_pers4genomes.grp.aln "
"-T 1 -m GTR -B 1000 --boot-trees --seqtype DNA --prefix test/data/tree/" "-T 1 -m GTR -B 1000 --boot-trees --seqtype DNA --prefix test/data/tree/"
"generated_by_func_tests/test_iqtree2/exp_pers4genomes.grp.aln.iqtree_tree " "generated_by_func_tests/test_iqtree2/exp_pers4genomes.grp.aln.iqtree_tree "
"-quiet") in out "--quiet") in out
assert "END" in out assert "END" in out
......
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