Commit e1f898b7 authored by Amandine  PERRIN's avatar Amandine PERRIN
Browse files

Add mash installation

parent 0ecf5112
Pipeline #15708 failed with stage
in 7 minutes and 1 second
from ubuntu:latest
from ubuntu:18.04
# Update apt-get packages
RUN apt-get update &&\
......@@ -14,6 +14,15 @@ RUN apt-get install -y \
RUN pip3 install --upgrade pip
# Install mash
WORKDIR /tmp
RUN wget https://github.com/marbl/Mash/releases/download/v2.2/mash-Linux64-v2.2.tar &&\
tar -xf mash-Linux64-v2.2.tar &&\
rm mash-Linux64-v2.2.tar &&\
mv /tmp/mash-Linux64-v2.2/mash /usr/local/bin &&\
rm -r mash-Linux64-v2.2
# Install barrnap
WORKDIR /tmp
RUN wget https://github.com/tseemann/barrnap/archive/0.8.tar.gz &&\
......
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