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Commit e7dfba08 authored by Amandine  PERRIN's avatar Amandine PERRIN
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indent error

parent 5afa4d9f
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...@@ -249,7 +249,8 @@ def test_run_tree(caplog): ...@@ -249,7 +249,8 @@ def test_run_tree(caplog):
threads = 1 threads = 1
model = 'T' model = 'T'
write_boot = False write_boot = False
fme.run_tree(ALIGNMENT, boot, GENEPATH, quiet, threads, model=model, wb=write_boot) write_matrix = False
fme.run_tree(ALIGNMENT, boot, GENEPATH, quiet, threads, model=model, wb=write_boot, matrix=write_matrix)
assert "Converting fasta alignment to PHYLIP-relaxed format" in caplog.text assert "Converting fasta alignment to PHYLIP-relaxed format" in caplog.text
assert "Running FastME..." in caplog.text assert "Running FastME..." in caplog.text
assert ("fastme " assert ("fastme "
...@@ -274,7 +275,7 @@ def test_run_tree(caplog): ...@@ -274,7 +275,7 @@ def test_run_tree(caplog):
threads = 1 threads = 1
model = 'T' model = 'T'
write_boot = True write_boot = True
fme.run_tree(ALIGNMENT, boot, GENEPATH, quiet, threads, model=model, wb=write_boot) fme.run_tree(ALIGNMENT, boot, GENEPATH, quiet, threads, model=model, matrix=write_matrix, wb=write_boot)
assert "Phylip alignment file already existing." in caplog.text assert "Phylip alignment file already existing." in caplog.text
assert ("The Phylip alignment file " assert ("The Phylip alignment file "
"test/data/tree/generated_by_unit-tests/exp_pers4genomes.grp.aln.phylip " "test/data/tree/generated_by_unit-tests/exp_pers4genomes.grp.aln.phylip "
......
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