Commit e808b1b7 authored by Amandine  PERRIN's avatar Amandine PERRIN
Browse files

download new blast+ latest version

parent 0d158e47
Pipeline #34357 failed with stage
in 9 minutes and 3 seconds
......@@ -4,7 +4,6 @@ from ubuntu:18.04
RUN apt-get update &&\
apt-get -y upgrade
# Install packages needed and update pip
RUN apt-get install -y \
wget \
......@@ -13,15 +12,13 @@ RUN apt-get install -y \
# Upgrade pip
RUN pip3 install --upgrade pip
# Update makeblastdb and blastp for prokka
WORKDIR /tmp
RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/ncbi-blast-2.10.0+-x64-linux.tar.gz &&\
tar zxvpf ncbi-blast-2.10.0+-x64-linux.tar.gz &&\
cp /tmp/ncbi-blast-2.10.0+/bin/makeblastdb /usr/local/bin/ &&\
cp /tmp/ncbi-blast-2.10.0+/bin/blastp /usr/local/bin/ &&\
rm ncbi-blast-2.10.0+-x64-linux.tar.gz
RUN wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/ncbi-blast-2.10.1+-x64-linux.tar.gz &&\
tar zxvpf ncbi-blast-2.10.1+-x64-linux.tar.gz &&\
cp /tmp/ncbi-blast-2.10.1+/bin/makeblastdb /usr/local/bin/ &&\
cp /tmp/ncbi-blast-2.10.1+/bin/blastp /usr/local/bin/ &&\
rm ncbi-blast-2.10.1+-x64-linux.tar.gz
# Install prokka:
WORKDIR /tmp
......@@ -35,7 +32,6 @@ RUN apt-get install -y\
git clone https://github.com/tseemann/prokka.git &&\
/tmp/prokka/bin/prokka --setupdb &&\
ln -s /tmp/prokka/bin/prokka /usr/local/bin
RUN rm /usr/bin/mafft # remove mafft installed with bioperl
# Install quicktree
......
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