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Commit ec79f216 authored by Amandine  PERRIN's avatar Amandine PERRIN
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change taxid to compare refseq vs genbank

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...@@ -693,15 +693,10 @@ def test_download_2taxid(caplog): ...@@ -693,15 +693,10 @@ def test_download_2taxid(caplog):
def test_download_refseq_vs_genbank(caplog): def test_download_refseq_vs_genbank(caplog):
""" """
Give a taxid of a subspecies, download strains from refseq, and then from genbank. Give a taxid of a subspecies, download strains from refseq, and then from genbank.
Currently, no strains in refseq, and 2 in genbank.
<<<<<<< HEAD Currently, no strains in refseq, and 8 in genbank.
39831 = Klebsiella pneumoniae subsp. rhinoscleromatis
(60 = Vitreoscilla sp.)
=======
urrently, no strains in refseq, and 8 in genbank.
#39831 = Klebsiella pneumoniae subsp. rhinoscleromatis #39831 = Klebsiella pneumoniae subsp. rhinoscleromatis
60 = Vitreoscilla sp. 60 = Vitreoscilla sp.
>>>>>>> 0896f49 (change taxid to compare refseq vs genbank)
Later, there can be some in refseq, but always at least 2 more in genbank Later, there can be some in refseq, but always at least 2 more in genbank
""" """
caplog.set_level(logging.INFO) caplog.set_level(logging.INFO)
......
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