Commits · 0832c2dc3fc297c9da14f229c039fc75dc34bfd4 · Amandine PERRIN / panacota · GitLab

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Oct 12, 2020
- Always get uniq contig IDs with prokka · 0832c2dc
  Amandine PERRIN authored 4 years ago
  0832c2dc
- Reduce progressbar to default terminal size (79) · fe10f305
  Amandine PERRIN authored 4 years ago
  
  fe10f305
Oct 08, 2020
- Write errors with prokka to correct logger · d74b77be
  Amandine PERRIN authored 4 years ago
  
  d74b77be
Oct 02, 2020
- Fix tests for prokka annotation ignoring crisprs · 958870f6
  Amandine PERRIN authored 4 years ago
  
  958870f6
Sep 28, 2020
- solved problem with running prodigal on existing outdir ok · d425265d
  Amandine PERRIN authored 4 years ago
  
  d425265d
- debugging run prodigal tests · 1ffc3e45
  Amandine PERRIN authored 4 years ago
  
  1ffc3e45
- debugging run prodigal tests · 37bf2a96
  Amandine PERRIN authored 4 years ago
  
  37bf2a96
- debugging run prodigal tests · 6a4cd137
  Amandine PERRIN authored 4 years ago
  
  6a4cd137
- debugging run prodigal tests · e92bcdfc
  Amandine PERRIN authored 4 years ago
  
  e92bcdfc
- Add tests for run prodigal function · 265426b2
  Amandine PERRIN authored 4 years ago
  
  265426b2
- Add tests for check prodigal functions · 26790e80
  Amandine PERRIN authored 4 years ago
  
  26790e80
- tests for check_prokka function · a0c6f9ca
  Amandine PERRIN authored 4 years ago
  
  a0c6f9ca
Sep 17, 2020
- solve error in annote func tests · a8afea16
  Amandine PERRIN authored 4 years ago
  
  a8afea16
Sep 02, 2020
- add licence header for annotate module · c4283263
  Amandine PERRIN authored 4 years ago
  
  c4283263
Aug 19, 2020
- Update logger name in prodigal annotation function · 1c9bb2ac
  Amandine PERRIN authored 4 years ago
  
  1c9bb2ac
Jul 30, 2020
- Add begining of tests for prodigal annotation · 77423667
  Amandine PERRIN authored 5 years ago
  
  77423667
- All tests for common annotation functions · e18a2257
  Amandine PERRIN authored 5 years ago
  
  e18a2257
- tests for prokka annotation and checking · cc5a0674
  Amandine PERRIN authored 5 years ago
  
  cc5a0674
Jul 29, 2020
- prokka_prodigal_functions -> annotation_functions · 99cffeb9
  Amandine PERRIN authored 5 years ago
  
  99cffeb9
Dec 05, 2019
- Use sub-logger of annotate for general annotation functions · be6dd84b
  Amandine PERRIN authored 5 years ago
  
  be6dd84b
Aug 19, 2019
- Start fixing bug when prokka annotation from a non formatted sequence (for... · 09b55554
  Amandine PERRIN authored 5 years ago
  09b55554
Aug 05, 2019
- More comments on pool for annotation step · 7eff7c24
  Amandine PERRIN authored 5 years ago
  
  7eff7c24
Jul 31, 2019
- add path to sequence formatted · b074f0dc
  Amandine PERRIN authored 6 years ago
  
  b074f0dc
Jul 25, 2019
- Add prodigal command to details file · 752eecec
  Amandine PERRIN authored 6 years ago
  
  752eecec
Jul 22, 2019
- When checking prodigal, do not only check that files are present, also check... · 9eb35f33
  Amandine PERRIN authored 6 years ago
  9eb35f33
Jul 08, 2019
- check prodigal ok · ec45ff71
  Amandine PERRIN authored 6 years ago
  ec45ff71
May 29, 2019
- start of generate .prt from prodigal results · ebe1fd80
  Amandine PERRIN authored 6 years ago
  
  ebe1fd80
- add option small: · c7a79854
  Amandine PERRIN authored 6 years ago
  c7a79854
May 27, 2019
- More stuff to format genomes annotated by prodigal to gembase format · 93ed9871
  Amandine PERRIN authored 6 years ago
  
  93ed9871
May 23, 2019
- Add call to format prodigal into main formatting script · 4b919b1b
  Amandine PERRIN authored 6 years ago
  
  4b919b1b
May 13, 2019
- Cleaner version to run prodigal · 48c4cb17
  Amandine PERRIN authored 6 years ago
  
  48c4cb17
May 09, 2019
- Run prodigal is ok. Now, needs to return True if everything went well, so that... · bbc1203a
  Amandine PERRIN authored 6 years ago
  bbc1203a
May 06, 2019
- Main script for prodigal annotation: only logs for now · ab228506
  Amandine PERRIN authored 6 years ago
  
  ab228506
- Take into account prokka AND prodigal for annotation module · fb49677a
  Amandine PERRIN authored 6 years ago
  
  fb49677a
Apr 29, 2019
- change annote -> annotate in all files · 5c8e715b
  Amandine PERRIN authored 6 years ago
  
  5c8e715b
Apr 25, 2019
- Test for annotate/prokka_functions adapted with panacota · f6ea8875
  Amandine PERRIN authored 6 years ago
  
  f6ea8875
- Rename genomeAPCAT package to PanACoTA · d0fc0ff5
  Amandine PERRIN authored 6 years ago
  
  d0fc0ff5
Apr 16, 2019
- all tests for annotate module are done · 1de28c49
  Amandine PERRIN authored 6 years ago
  
  1de28c49
- tests for prokka functions except tests for 'run_prokka_all' · 5297866e
  Amandine PERRIN authored 6 years ago
  
  5297866e
- Adapt begining of tests for prokka functions · 602904f0
  Amandine PERRIN authored 6 years ago
  
  602904f0