Commits · module_all · Amandine PERRIN / panacota

Browse files

Oct 29, 2020
- remove debug print · ea523bf1
  Amandine PERRIN authored Oct 29, 2020
  
  ea523bf1
Oct 26, 2020
- Merge branch 'documentation' into module_all · 5a6a6372
  Amandine PERRIN authored Oct 26, 2020
  
  5a6a6372
- Update documentation · 1a8d5981
  Amandine PERRIN authored Oct 26, 2020
  
  1a8d5981
- Merge branch 'master' into documentation · ea19d523
  Amandine PERRIN authored Oct 26, 2020
  
  ea19d523
- change wording · a9f57913
  Amandine PERRIN authored Oct 26, 2020
  
  a9f57913
- rename all_modules -> all · 1279a1f9
  Amandine PERRIN authored Oct 26, 2020
  
  1279a1f9
Oct 23, 2020
- Func test tree module when not verbose · 9e67ecf8
  Amandine PERRIN authored Oct 23, 2020
  
  9e67ecf8
- add func tests for tree module · 6d9d6899
  Amandine PERRIN authored Oct 23, 2020
  
  6d9d6899
- change order of tests in CI · db7c991f
  Amandine PERRIN authored Oct 23, 2020
  
  db7c991f
Oct 22, 2020
- add run tree module to all_modules · 47076e6b
  Amandine PERRIN authored Oct 22, 2020
  
  47076e6b
- Trying to check args when running all modules · df7c68bc
  Amandine PERRIN authored Oct 22, 2020
  
  df7c68bc
- update functional tests to run · 0d696b5e
  Amandine PERRIN authored Oct 22, 2020
  
  0d696b5e
- complete util functions · 89a7186b
  Amandine PERRIN authored Oct 22, 2020
  
  89a7186b
- create .details log when running tree module · fa015c9a
  Amandine PERRIN authored Oct 22, 2020
  
  fa015c9a
- Write tree commands to details log · e62f4516
  Amandine PERRIN authored Oct 22, 2020
  
  e62f4516
- Adapt tests to align returning alignment file · af81011b
  Amandine PERRIN authored Oct 22, 2020
  
  af81011b
- Shorten progressbar title · 407d1f34
  Amandine PERRIN authored Oct 22, 2020
  
  407d1f34
- Return alignment file for next module · 4163b153
  Amandine PERRIN authored Oct 22, 2020
  
  4163b153
- Continue running all modules · 55bf2224
  Amandine PERRIN authored Oct 22, 2020
  
  55bf2224
- adapt func test corepers to return corepersfile · 4678f364
  Amandine PERRIN authored Oct 22, 2020
  
  4678f364
- Check parser type from utils_argparse · 7338b5c9
  Amandine PERRIN authored Oct 22, 2020
  
  7338b5c9
- Adapt func tests to pangenome returning its outfile · 4b9a2f88
  Amandine PERRIN authored Oct 22, 2020
  
  4b9a2f88
- Add mmseqs commands at details level · 39e6969b
  Amandine PERRIN authored Oct 22, 2020
  
  39e6969b
- pangenome now returns its output file · 3b8856bf
  Amandine PERRIN authored Oct 22, 2020
  
  3b8856bf
- Adapt tests to what annotate now returns · e7f317b1
  Amandine PERRIN authored Oct 22, 2020
  
  e7f317b1
- Annotate now returns lstinfo and #genomes · 972eb235
  Amandine PERRIN authored Oct 22, 2020
  
  972eb235
- Adapt progress bar to default terminal size · b7983581
  Amandine PERRIN authored Oct 22, 2020
  
  b7983581
- Adapt tests to prepare returning infofile · 5ee85c94
  Amandine PERRIN authored Oct 22, 2020
  
  5ee85c94
- Prepare module now returns the output info file · 2a3a9ab2
  Amandine PERRIN authored Oct 22, 2020
  
  2a3a9ab2
Oct 20, 2020
- update version number · 1ff0d70e
  Amandine PERRIN authored Oct 20, 2020
  
  1ff0d70e
- Add start for running the whole pipeline · 2d3bb554
  Amandine PERRIN authored Oct 20, 2020
  
  2d3bb554
- Move check type of argument (percentage) to utils_argparse.py · 2dc6b57c
  Amandine PERRIN authored Oct 20, 2020
  
  2dc6b57c
Oct 19, 2020
- v1.0.1.0 · a9b8567e
  Amandine PERRIN authored Oct 19, 2020
  
  a9b8567e
- replace pypi by pip, most known by users · 345656da
  Amandine PERRIN authored Oct 19, 2020
  
  345656da
- Update readme with more clear installation process · 89153629
  Amandine PERRIN authored Oct 19, 2020
  
  89153629
- Add pypi link in readme · 48348d3e
  Amandine PERRIN authored Oct 19, 2020
  
  48348d3e
- Merge branch 'master' into pypi · c2132851
  Amandine PERRIN authored Oct 19, 2020
  
  c2132851
- ready to upload on pypi · 2ab3e48e
  Amandine PERRIN authored Oct 19, 2020
  
  2ab3e48e
- add requirements.txt to dist package · 0a75c03b
  Amandine PERRIN authored Oct 19, 2020
  
  0a75c03b
- v1.0.1 · 11762012
  Amandine PERRIN authored Oct 19, 2020
  
  11762012