Add new section in ariaec.ini setup

ariaec/conf/aria_ec.ini

@@ -118,9 +118,11 @@ water_refinement_solvent:                   water
 water_refinement_n_structures:              10
 water_refinement_enabled:                   no
 water_refinement_write_solvent_molecules:   no
-procheck_executable:                        procheck
-prosa_executable:                           prosa
-whatif_executable:                          whatif
+procheck_executable:
+prosa_executable:
+whatif_executable:
+clashlist_executable:
+pickle_output:                              no
 
 [contactmap]
 ; -------------------------- Contactmap parameters --------------------------- #

ariaec/templates/aria_project.xml

@@ -120,12 +120,12 @@
     <procheck executable="%(procheck_executable)s" enabled="yes"/>
     <prosa executable="%(prosa_executable)s" enabled="yes"/>
     <whatif executable="%(whatif_executable)s" enabled="yes"/>
-    <clashlist executable="" enabled="no"/>
+    <clashlist executable="%(clashlist_executable)s" enabled="no"/>
   </analysis>
   <report>
     <ccpn export_assignments="no" export_noe_restraint_list="no" export_structures="no"/>
     <molmol enabled="yes"/>
-    <noe_restraint_list pickle_output="no" text_output="yes" xml_output="no"/>
+    <noe_restraint_list pickle_output="%(pickle_output)s" text_output="yes" xml_output="no"/>
     <spectra write_assigned="no" write_assigned_force="no" iteration="last" write_unambiguous_only="yes"/>
   </report>
 </project>