Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
B
bioinfo_utils
Manage
Activity
Members
Labels
Plan
Wiki
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Container registry
Model registry
Operate
Environments
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
GitLab community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
Blaise LI
bioinfo_utils
Commits
2cf48265
Commit
2cf48265
authored
5 years ago
by
Blaise Li
Browse files
Options
Downloads
Plain Diff
Merge branch 'master' of gitlab.pasteur.fr:bli/bioinfo_utils
parents
bd7d9415
c8d6fc0e
No related branches found
No related tags found
No related merge requests found
Changes
3
Show whitespace changes
Inline
Side-by-side
Showing
3 changed files
bam25prime
+1
-1
1 addition, 1 deletion
bam25prime
libhts
+1
-1
1 addition, 1 deletion
libhts
small_RNA-seq/requirements.txt
+2
-2
2 additions, 2 deletions
small_RNA-seq/requirements.txt
with
4 additions
and
4 deletions
bam25prime
@
04678029
Subproject commit
e196dc25c2725c932974444d76ee16097488dda0
Subproject commit
0467802954cef4c07a1adfc4b9692bd9fdd6f792
This diff is collapsed.
Click to expand it.
libhts
@
3bf44740
Subproject commit
e2deadec42e7eb8a61d083c99cc6e7a7728de5e6
Subproject commit
3bf447402ee938d825ac43b33d12bb065c88139f
This diff is collapsed.
Click to expand it.
small_RNA-seq/requirements.txt
+
2
−
2
View file @
2cf48265
...
...
@@ -15,8 +15,8 @@ libworkflows @ git+https://bioinfo_utils:tfuTQsSZWMtC5xXJNFJh@gitlab.pasteur.fr/
snakemake_wrappers @ git+https://bioinfo_utils:Ues9rP1tyfzs1zs5BzpY@gitlab.pasteur.fr/bli/snakemake_wrappers.git
rpy2
# extra dependencies for the sRNA-seq annotation script small_RNA_seq_annotate.py
#
pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers --global-option="cythonize"
pybedtools
pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers --global-option="cythonize"
#
pybedtools
pysam
paraccumulators @ git+https://bioinfo_utils:EfTj-nvWDN84ZF_UzWPx@gitlab.pasteur.fr/bli/paraccumulators.git
# extra dependencies for some rules
...
...
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment