Fixing file name in all input.

small_RNA-seq/small_RNA-seq.snakefile

@@ -948,9 +948,13 @@ rule all:
         #     "all_{small_type}_{mapping_type}_{biotype}_{orientation}_transcript_counts.txt"),
         #     small_type=READ_TYPES_FOR_MAPPING, mapping_type=[f"on_{genome}"], biotype=set(COUNT_BIOTYPES + ANNOT_BIOTYPES), orientation=ORIENTATIONS),
         # Note (14/02/2022): no pi here: Why ? -> Let's add pi while we're adding missing tRF
+        #expand(
+        #    OPJ(annot_counts_dir, f"all_{size_selected}_on_{genome}", "{small_type}_RPM.txt"),
+        #    small_type=["pi", "mi", "tRF", *SI_TYPES, *SIU_TYPES, f"pimi{SI_MIN}G", f"pimi{SI_MIN}GtRF"]),
         expand(
-            OPJ(annot_counts_dir, f"all_{size_selected}_on_{genome}", "{small_type}_RPM.txt"),
-            small_type=["pi", "mi", "tRF", *SI_TYPES, *SIU_TYPES, f"pimi{SI_MIN}G", f"pimi{SI_MIN}GtRF"]),
+            OPJ(annot_counts_dir, f"all_{size_selected}_on_{genome}", "{small_type}_RPM_by_{norm}.txt"),
+            small_type=["pi", "mi", "tRF", *SI_TYPES, *SIU_TYPES, f"pimi{SI_MIN}G", f"pimi{SI_MIN}GtRF"],
+            norm=RPM_NORMS),
         # piRNA and satel_siu raise ValueError: `dataset` input should have multiple elements when plotting
         # simrep_siu raise TypeError: Empty 'DataFrame': no numeric data to plot
         expand(