Back to custom pybedtools.

bam25prime @ 04678029

-Subproject commit e196dc25c2725c932974444d76ee16097488dda0
+Subproject commit 0467802954cef4c07a1adfc4b9692bd9fdd6f792

libhts @ 2b8a5ee6

-Subproject commit e2deadec42e7eb8a61d083c99cc6e7a7728de5e6
+Subproject commit 2b8a5ee6c704c7163bcf817c7673b6691f3280aa

small_RNA-seq/requirements.txt

@@ -15,8 +15,8 @@ libworkflows @ git+https://bioinfo_utils:tfuTQsSZWMtC5xXJNFJh@gitlab.pasteur.fr/
 snakemake_wrappers @ git+https://bioinfo_utils:Ues9rP1tyfzs1zs5BzpY@gitlab.pasteur.fr/bli/snakemake_wrappers.git
 rpy2
 # extra dependencies for the sRNA-seq annotation script small_RNA_seq_annotate.py
-# pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers --global-option="cythonize"
-pybedtools
+pybedtools @ git+https://github.com/blaiseli/pybedtools.git@fix_missing_headers --global-option="cythonize"
+# pybedtools
 pysam
 paraccumulators @ git+https://bioinfo_utils:EfTj-nvWDN84ZF_UzWPx@gitlab.pasteur.fr/bli/paraccumulators.git
 # extra dependencies for some rules