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Blaise LI
bioinfo_utils
Commits
d55ce316
Commit
d55ce316
authored
Nov 18, 2019
by
Blaise Li
Browse files
Added symlink to install step.
parent
e97f55e8
Changes
1
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Inline
Side-by-side
singularity/Makefile
View file @
d55ce316
VERSION
:=
$(
shell
git log |
head
-1
|
cut
-d
" "
-f2
)
ifeq
($(PREFIX),)
PREFIX
:=
/opt/bioinfo_utils
_
$(VERSION)
PREFIX
:=
/opt/bioinfo_utils
endif
install
:
all
install
-d
$(PREFIX)
/bin
install
run_pipeline
$(PREFIX)
/bin/.
install
run_pipeline.sh
$(PREFIX)
/bin/.
install
-d
$(PREFIX)
_
$(VERSION)
/bin
install
run_pipeline
$(PREFIX)
_
$(VERSION)
/bin/.
install
run_pipeline.sh
$(PREFIX)
_
$(VERSION)
/bin/.
for
datatype
in
sRNA-seq smallRNA-seq RNA-seq GRO-seq PRO-seq Degradome-seq Ribo-seq iCLIP-seq iCLIP
;
\
do
\
ln
-s
$(PREFIX)
/bin/run_pipeline.sh
$(PREFIX)
/bin/run_
$
${datatype}
_pipeline
;
\
ln
-s
f
$(PREFIX)
_
$(VERSION)
/bin/run_pipeline.sh
$(PREFIX)
_
$(VERSION)
/bin/run_
$
${datatype}
_pipeline
;
\
done
ln
-sf
$(PREFIX)
_
$(VERSION)
$(PREFIX)
all
:
run_pipeline
...
...
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