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Blaise LI
bioinfo_utils
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master
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bioinfo_utils
CLIP
iCLIP_trim_and_dedup_nostrip.sh
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authors
Blaise LI
bli
1 author
Nov 18, 2019
Added and reorganized trimming scripts.
· 964ae912
Blaise Li
authored
5 years ago
964ae912
Jun 08, 2018
Error in trimming length.
· 5a2c310b
Blaise Li
authored
7 years ago
5a2c310b
May 18, 2018
Removed the low-quality zones removal.
· 71468ece
Blaise Li
authored
7 years ago
71468ece
Feb 02, 2018
Pipeline to process iCLIP data.
· 53909846
Blaise Li
authored
7 years ago
53909846
Jan 18, 2018
Homogenized GRO-seq trim_and_dedup with iCLIP.
· c9217c51
Blaise Li
authored
7 years ago
c9217c51
Aug 03, 2017
Use external script PRO-seq_trim_and_dedup.sh
· b9ba6fbd
Blaise Li
authored
7 years ago
b9ba6fbd
Aug 02, 2017
Snakefile for PRO-seq, fastx_clipper keeps Ns.
· dcb9d6e3
Blaise Li
authored
7 years ago
dcb9d6e3
Can use cutadapt or fastx_clipper to trim adapter.
· 480bbaaa
Blaise Li
authored
7 years ago
480bbaaa
Aug 01, 2017
Configurable 5' and 3' UMI sizes, count reads.
· 4777a77c
Blaise Li
authored
7 years ago
4777a77c
Apr 12, 2017
Script that trims and deduplicate PRO-seq reads.
· 84d9beba
Blaise Li
authored
8 years ago
84d9beba
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