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Ribo-seq is still not up-to-date.

The idea is to associate a methods file to certain rules in order to
make it easier to write methods when publishing results. Rules can copy
the methods files of upstream rules before appending their part.

For some reason, the default XML R package is not compatible any more
with R 3.6.3. An older version has to be manually installed to be able
to install DESeq2.

Also update submission pipeline to accomodate for possible absence of
libraries for an analysis (for instance, if they have been commented out
in the .yaml file because they have already been submitted).

Not sure whether this will be the path of where the analysis was started
from or where the results are actually generated.

This is likely not a good idea. Just submitting before reverting.

See https://stackoverflow.com/a/47135119

This is for compatibility with the wrapper.