Commits · master · Blaise LI / bioinfo_utils

05 Mar, 2021 2 commits
- Accept methods outputs and genome config file. · 08f6f523
  Blaise Li authored Mar 05, 2021
  
  08f6f523
- Update max size in sRNA nomenclature chart. · 89dab599
  Blaise Li authored Mar 05, 2021
  
  89dab599
04 Mar, 2021 4 commits
- Fix figure names: not scaled. · bd3d1b9d
  Blaise Li authored Mar 04, 2021
  
  bd3d1b9d
- Pickling issues when using threads in ReadStats? · edc9a007
  Blaise Li authored Mar 04, 2021
  
  edc9a007
- Made snakemake_wrappers require same libreads · ef59eb10
  Blaise Li authored Mar 04, 2021
  
  ef59eb10
- Use libreads to produce base proportions graphs. · c1fb87be
  Blaise Li authored Mar 04, 2021
  
  c1fb87be
28 Dec, 2020 2 commits
- Missing dependency for pandas to markdown. · 5a6a197c
  Blaise Li authored Dec 28, 2020
  
  5a6a197c
- Debugging duplicate genes. · ac0d5369
  Blaise Li authored Dec 28, 2020
  
  ac0d5369
15 Dec, 2020 1 commit
- New script in libhts, requirements updates ensue. · 3a900921
  Blaise Li authored Dec 15, 2020
  
  3a900921
11 Dec, 2020 3 commits
- Temporarily witching matplotlib renderer. · 7d061f4d
  Blaise Li authored Dec 11, 2020
  
  7d061f4d
- Missing import, git typo. · b9c475cd
  Blaise Li authored Dec 11, 2020
  
  b9c475cd
- Trying pyseqlogo. · 0586e07d
  Blaise Li authored Dec 11, 2020
  
  0586e07d
10 Dec, 2020 4 commits
- Further fixing pip reslover issues. · dc39a9df
  Blaise Li authored Dec 10, 2020
  
  dc39a9df
- Further trying to satisfy new pip. · bd7032a4
  Blaise Li authored Dec 10, 2020
  
  bd7032a4
- Trying to satisfy the new dependency solver. · e3fd3ba9
  Blaise Li authored Dec 10, 2020
  
  e3fd3ba9
- Simplifying dependencies. · 8581c881
  Blaise Li authored Dec 10, 2020
  
  8581c881
09 Dec, 2020 10 commits
- Adjust requirements. · 67d74635
  Blaise Li authored Dec 09, 2020
```
Hopefully nothing is missing.
```
  67d74635
- Strip down requirements. · 4d082fbe
  Blaise Li authored Dec 09, 2020
  
  4d082fbe
- Switch composition plot aspect ratio. · 8b630e76
  Blaise Li authored Dec 09, 2020
  
  8b630e76
- Using legacy pip dependency resolver. · e385e7bd
  Blaise Li authored Dec 09, 2020
```
Also reverting to using unofficial pybedtools.
```
  e385e7bd
- Remove deploy tokens. · 45a9c994
  Blaise Li authored Dec 09, 2020
  
  45a9c994
- Trying to simplify dependencies. · bad18a46
  Blaise Li authored Dec 09, 2020
  
  bad18a46
- Try to make wider composition plots. · 1354450d
  Blaise Li authored Dec 09, 2020
  
  1354450d
- Try relaxed pybedtools dependency in bam25prime. · 1fbf8f63
  Blaise Li authored Dec 09, 2020
  
  1fbf8f63
- Use newer nim version. · 861e1dcc
  Blaise Li authored Dec 09, 2020
  
  861e1dcc
- Explicitly ask for RPF composition tables. · 458a5de3
  Blaise Li authored Dec 09, 2020
  
  458a5de3
06 Oct, 2020 7 commits
- Avoid spurious whithe characters from wrapper. · b2a09b44
  Blaise Li authored Oct 06, 2020
  
  b2a09b44
- Added some methods elements to Degradome-seq. · 7bdbd839
  Blaise Li authored Oct 06, 2020
```
This has not been tested.
```
  7bdbd839
- Fix variable name in wrapper. · c5c05d4f
  Blaise Li authored Oct 06, 2020
  
  c5c05d4f
- Wrong splitting character in wrapper. · ad591728
  Blaise Li authored Oct 06, 2020
  
  ad591728
- Default split not appropriate in wrapper. · 5a33db5a
  Blaise Li authored Oct 06, 2020
  
  5a33db5a
- Wrong string type in wrapper. · 2f49422a
  Blaise Li authored Oct 06, 2020
  
  2f49422a
- Wrong percentage use in wrapper. · 0c5e3f3f
  Blaise Li authored Oct 06, 2020
  
  0c5e3f3f
05 Oct, 2020 7 commits
- Wrong commit hash in requirements. · f80533ab
  Blaise Li authored Oct 05, 2020
  
  f80533ab
- Avoid pipefail when using head. · 4cdf184d
  Blaise Li authored Oct 05, 2020
  
  4cdf184d
- Trying to have params set in wrapper. · ee182bc8
  Blaise Li authored Oct 05, 2020
  
  ee182bc8
- Update snakemake_wrappers (missing import). · 45734593
  Blaise Li authored Oct 05, 2020
  
  45734593
- Fix syntax error in wrapper. · 909a22d3
  Blaise Li authored Oct 05, 2020
  
  909a22d3
- Can't use generator as input function in wrapper. · 33564325
  Blaise Li authored Oct 05, 2020
  
  33564325
- Typo. · fc322b26
  Blaise Li authored Oct 05, 2020
  
  fc322b26