Commit abd74548 authored by Blaise Li's avatar Blaise Li
Browse files

More robust python module install.

Depending on pip version, `pip3.6` sometimes fail with
"ImportError: cannot import name 'main'".

Using `python3.6 -m pip` instead avoids this.
parent 3d62098c
#!/bin/sh
python3.6 setup.py build_ext
# .egg-link does not work with PYTHONPATH ?
pip3.6 install -e .
pip3.6 install --no-deps --ignore-installed .
python3.6 -m pip install -e .
python3.6 -m pip install --no-deps --ignore-installed .
......@@ -139,7 +139,7 @@ def gtf_2_genes_exon_lengths(gtf_filename):
def repeat_bed_2_lengths(repeat_bed):
"""Computes the lengths of repeatitive elements in a bed file, grouped by families.
"""Computes the lengths of repetitive elements in a bed file, grouped by families.
This assumes that the elements have their names composed of the family name,
then a colon, then a number. For instance:
Simple_repeat|Simple_repeat|(TTTTTTG)n:1
......
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