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libsnp
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0.2.1
0.2.0
0.1.4
0.1.3
0.1.2
0.1.1
0.1.0
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Created with Raphaël 2.2.0
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Add options to tweak dendrogram orientation.
main
main
Add Scipy citation for dendrogram building.
Don't check depth coherence by default.
Allow non-biallelic variants.
Optional extra annotations as index columns.
0.2.1
0.2.1
Update copyright years.
MNPs not skipped any more. Option to allow others.
0.2.0
0.2.0
Cannot deal with None as dict.
More missing dependencies.
Add scipy dependency and ruff settigs.
Add options to do "partial" PCA.
Added code to plot PCA, and methods.
Added function to compute freq-based pseudo-FSTs.
0.1.4
0.1.4
Testing logging
Add wrappper function to perform PCA.
Add function to make and plot freq-based tree.
Revert "Tryng to fix KeyError."
Tryng to fix KeyError.
Switch from pysam to cyvcf2.
Made separate functions to clean counts table.
Linting
0.1.3
0.1.3
Add alt allele frequency calculator.
Avoid deprecation warning in test.
0.1.2
0.1.2
Added function to merge count tables in a dict.
Adding tabix index for example vcf file.
Update build settings.
0.1.1
0.1.1
One function to load counts from joint .vcf
0.1.0
0.1.0