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Blaise LI
Some useful Python libraries
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77c6dca0
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77c6dca0
authored
9 months ago
by
Blaise Li
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@@ -42,6 +42,15 @@ I haven't used it yet.
...
@@ -42,6 +42,15 @@ I haven't used it yet.
URL:
<https://github.com/yglukhov/nimpy>
URL:
<https://github.com/yglukhov/nimpy>
### codon
To compile code written in some restricted version of the Python language into
hopefully something more efficient than a Python script.
I haven't tried it.
URL:
<https://docs.exaloop.io/codon>
### beautifulsoup
### beautifulsoup
To parse XML formats.
To parse XML formats.
...
@@ -118,7 +127,7 @@ URL: <https://networkx.org/>
...
@@ -118,7 +127,7 @@ URL: <https://networkx.org/>
### polars
### polars
Promises efficient data frames to use instead of pandas.
Promises efficient data frames to use instead of pandas.
I haven't tried it yet as of
august
202
3
.
I haven't tried it yet as of
September
202
4
.
URL:
<https://www.pola.rs/>
URL:
<https://www.pola.rs/>
...
@@ -177,6 +186,12 @@ To work with genome annotations.
...
@@ -177,6 +186,12 @@ To work with genome annotations.
URL:
<https://daler.github.io/gffutils/>
URL:
<https://daler.github.io/gffutils/>
### pyranges
To work with genome annotations.
URL:
<https://pyranges.readthedocs.io/>
### pybedtools
### pybedtools
Wrapper around bedtools, to work with genomic intervals.
Wrapper around bedtools, to work with genomic intervals.
...
@@ -267,7 +282,7 @@ URL: <https://python-charts.com/>
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@@ -267,7 +282,7 @@ URL: <https://python-charts.com/>
A way to store jupyter notebooks in a more human-readable format (without
A way to store jupyter notebooks in a more human-readable format (without
outputs), possibly paired with standard .ipynb notebook.
outputs), possibly paired with standard .ipynb notebook.
As of
january
2024, I haven't tried it.
As of
September
2024, I haven't tried it.
URL:
<https://github.com/mwouts/jupytext>
URL:
<https://github.com/mwouts/jupytext>
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