Skip to content
Snippets Groups Projects
Commit 77c6dca0 authored by Blaise Li's avatar Blaise Li
Browse files

Mention pyranges.

parent c3e2a6c5
Branches
No related tags found
No related merge requests found
...@@ -42,6 +42,15 @@ I haven't used it yet. ...@@ -42,6 +42,15 @@ I haven't used it yet.
URL: <https://github.com/yglukhov/nimpy> URL: <https://github.com/yglukhov/nimpy>
### codon
To compile code written in some restricted version of the Python language into
hopefully something more efficient than a Python script.
I haven't tried it.
URL: <https://docs.exaloop.io/codon>
### beautifulsoup ### beautifulsoup
To parse XML formats. To parse XML formats.
...@@ -118,7 +127,7 @@ URL: <https://networkx.org/> ...@@ -118,7 +127,7 @@ URL: <https://networkx.org/>
### polars ### polars
Promises efficient data frames to use instead of pandas. Promises efficient data frames to use instead of pandas.
I haven't tried it yet as of august 2023. I haven't tried it yet as of September 2024.
URL: <https://www.pola.rs/> URL: <https://www.pola.rs/>
...@@ -177,6 +186,12 @@ To work with genome annotations. ...@@ -177,6 +186,12 @@ To work with genome annotations.
URL: <https://daler.github.io/gffutils/> URL: <https://daler.github.io/gffutils/>
### pyranges
To work with genome annotations.
URL: <https://pyranges.readthedocs.io/>
### pybedtools ### pybedtools
Wrapper around bedtools, to work with genomic intervals. Wrapper around bedtools, to work with genomic intervals.
...@@ -267,7 +282,7 @@ URL: <https://python-charts.com/> ...@@ -267,7 +282,7 @@ URL: <https://python-charts.com/>
A way to store jupyter notebooks in a more human-readable format (without A way to store jupyter notebooks in a more human-readable format (without
outputs), possibly paired with standard .ipynb notebook. outputs), possibly paired with standard .ipynb notebook.
As of january 2024, I haven't tried it. As of September 2024, I haven't tried it.
URL: <https://github.com/mwouts/jupytext> URL: <https://github.com/mwouts/jupytext>
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Please register or to comment