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Spot Tracking plugin for Icy

Spot detector plugin for Icy

Create a list of tag and apply them to ROIs.

Manage a list of ROIs that the user can store and pop back in one click.

This plugin extracts groups of connected pixels in 2D and 3D based on their intensity and that of the background. Works on both binary and gray-scale data. Output can be pushed to the swimming pool for other plug-ins to further exploi

QuickHull library for Icy. Computes convex envelopes of random point sets in 2D or 3D.

A open-source utility library for linear programming in Java with the simplex algorithm.

Track Manager plugin for Icy

Toolbox to create and manipulate result tables with plug-ins and protocols, and export as text file or to your favorite spreadsheet software

Common parent POM for all Icy related projects

Tools to design and analyse CRISPRi experiments

Icy is an open community platform for bioimage informatics

Neural SDE generative model for Drosophila larva 2D contour trajectories

A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute:

clean and harmonize data with jass_preprocessing if specified impute data with RAISS create input data for JASS analyse group of trait with jass