A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute:

clean and harmonize data with jass_preprocessing if specified impute data with RAISS create input data for JASS analyse group of trait with jass
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compare_outputs.py Loading commit data...
compare_outputs_2.py Loading commit data...
extract_sample_size.py Loading commit data...
generate_trait_pairs.py Loading commit data...
jass_pipeline.nf Loading commit data...
nextflow.config Loading commit data...
nextflow_slurm.config Loading commit data...
parse_correlation_results.py Loading commit data...
sbatch_nextflow.sh Loading commit data...